RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA222400" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA222400 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1642040 1642040 PRJNA222400_P_NODE_9242_length_162_cov_1.008850_g9209_i0 PRJNA222400 9242 162 1.00885 1.634337 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 115 1.7e-21   NTclustered gi|551617584|ref|XM_005789563.1| 280463 g9209 i0 83.871 5.51234567901235 124 16 75 4 6 127 79 200 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 893 115 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
24593489 24593489 PRJNA222400_P_NODE_9500_length_160_cov_2.045045_g9467_i0 PRJNA222400 9500 160 2.045045 3.272072 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 108 2.79e-19   NTclustered gi|551558643|ref|XM_005766240.1| 280463 g9467 i0 79.012 5.78125 162 30 100 4 1 160 697 538 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 925 108 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;