RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA222400" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA222400 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
367264 367264 PRJNA222400_P_NODE_921_length_535_cov_6.325103_g890_i0 PRJNA222400 921 535 6.325103 33.83930105 Thecamonas trahens 529818 Root_unresolved Root_unresolved 224 1.05e-53   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g890 i0 82.879 12.4542056074766 257 36 47 6 65 317 529 277 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 6663 224 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
8020573 8020573 PRJNA222400_P_NODE_167_length_1152_cov_6.285585_g152_i0 PRJNA222400 167 1152 6.285585 72.4099392 Thecamonas trahens 529818 Root_unresolved Root_unresolved 409 6.05e-109   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g152 i0 76.549 17.0772569444444 823 147 69 33 212 1011 997 198 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 19673 409 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
10571255 10571255 PRJNA222400_P_NODE_349_length_834_cov_2.666242_g325_i0 PRJNA222400 349 834 2.666242 22.23645828 Thecamonas trahens 529818 Root_unresolved Root_unresolved 348 9.56e-91   NTclustered gi|923133140|ref|XM_013904582.1| 461836 g325 i0 79.352 34.5347721822542 494 102 59 0 62 555 1 494 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_03185), partial mRNA blastn 28802 348 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
23319264 23319264 PRJNA222400_P_NODE_419_length_773_cov_2.737569_g325_i1 PRJNA222400 419 773 2.737569 21.16140837 Thecamonas trahens 529818 Root_unresolved Root_unresolved 348 8.82e-91   NTclustered gi|923133140|ref|XM_013904582.1| 461836 g325 i1 79.352 37.2600258732212 494 102 64 0 62 555 1 494 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_03185), partial mRNA blastn 28802 348 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;