RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

26 rows where analysis = "blastn", bioproject = "PRJNA222400" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 26 ✖

bioproject 1

  • PRJNA222400 · 26 ✖

analysis 1

  • blastn · 26 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
367200 367200 PRJNA222400_P_NODE_3701_length_234_cov_1.902703_g3668_i0 PRJNA222400 3701 234 1.902703 4.45232502 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 209 1.18e-49   NTclustered gi|470525569|ref|XM_004356569.1| 1257118 g3668 i0 83.19 1.84188034188034 232 35 98 4 3 232 556 785 Acanthamoeba castellanii str. Neff mitochondrial phosphate transporter, putative (ACA1_173800), partial mRNA blastn 431 209 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1641982 1641982 PRJNA222400_P_NODE_3042_length_270_cov_2.004525_g3009_i0 PRJNA222400 3042 270 2.004525 5.4122175 Entamoeba invadens 33085 Evosea other_Eukaryota 126 1.44e-24   NTclustered gi|511093284|dbj|AK424015.1| 33085 g3009 i0 83.212 9.11481481481482 137 23 51 0 44 180 1146 1282 Entamoeba invadens cDNA clone: Xei-012P21, elongation factor 1-alpha, putative, complete cds, strain: IP1 blastn 2461 126 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
1641991 1641991 PRJNA222400_P_NODE_4262_length_216_cov_0.904192_g4229_i0 PRJNA222400 4262 216 0.904192 1.95305472 Heterostelium album 2086695 Evosea other_Eukaryota 237 4.8999999999999996e-58   NTclustered gi|1160573488|ref|XM_020576922.1| 670386 g4229 i0 86.854 3.88425925925926 213 26 98 2 5 216 1 212 Polysphondylium pallidum PN500 Ras GTPase (rasG), partial mRNA blastn 839 237 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
1642020 1642020 PRJNA222400_P_NODE_7282_length_169_cov_0.866667_g7249_i0 PRJNA222400 7282 169 0.866667 1.46466723 Cavenderia fasciculata 261658 Evosea other_Eukaryota 104 3.84e-18   NTclustered gi|470239368|ref|XM_004351398.1| 261658 g7249 i0 88.372 3.26627218934911 86 10 51 0 73 158 311 226 Cavenderia fasciculata 60S ribosomal protein L9 (rpl9), partial mRNA blastn 552 104 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
2917795 2917795 PRJNA222400_P_NODE_1863_length_371_cov_1.602484_g1830_i0 PRJNA222400 1863 371 1.602484 5.94521564 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 285 3.1899999999999997e-72   NTclustered gi|470375882|ref|XM_004333185.1| 1257118 g1830 i0 86.038 106.266846361186 265 37 71 0 1 265 192 456 Acanthamoeba castellanii str. Neff ubiquitin domain containing protein (ACA1_389410), partial mRNA blastn 39425 285 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2917876 2917876 PRJNA222400_P_NODE_9083_length_163_cov_0.912281_g9050_i0 PRJNA222400 9083 163 0.912281 1.48701803 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.014   NTclustered gi|470446047|ref|XM_004339863.1| 1257118 g9050 i0 96.875 0.196319018404908 32 0 20 1 132 163 390 420 Acanthamoeba castellanii str. Neff RasGEF domain containing protein (ACA1_206320), partial mRNA blastn 32 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4194253 4194253 PRJNA222400_P_NODE_1524_length_415_cov_2.573770_g1491_i0 PRJNA222400 1524 415 2.57377 10.6811455 Entamoeba nuttalli 412467 Evosea other_Eukaryota 195 6.269999999999999e-45   NTclustered gi|672810997|ref|XM_008862315.1| 1076696 g1491 i0 81.897 4.83614457831325 232 40 56 2 41 271 38 268 Entamoeba nuttalli P19 ribosomal S17 protein partial mRNA blastn 2007 195 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba nuttalli
5470601 5470601 PRJNA222400_P_NODE_9185_length_162_cov_1.778761_g9152_i0 PRJNA222400 9185 162 1.778761 2.88159282 Entamoeba dispar 46681 Evosea other_Eukaryota 198 1.64e-46   NTclustered gi|167381527|ref|XM_001735709.1| 370354 g9152 i0 89.241 95.7345679012346 158 17 98 0 5 162 449 292 Entamoeba dispar SAW760 actin (EDI_325560), partial mRNA blastn 15509 198 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
6744810 6744810 PRJNA222400_P_NODE_2026_length_353_cov_2.049342_g1993_i0 PRJNA222400 2026 353 2.049342 7.23417726 Acytostelium subglobosum 361139 Evosea other_Eukaryota 193 1.88e-44   NTclustered gi|831757457|ref|XM_012893582.1| 1410327 g1993 i0 84.817 15.628895184136 191 29 54 0 17 207 671 861 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 5517 193 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
8020589 8020589 PRJNA222400_P_NODE_2747_length_289_cov_1.116667_g2714_i0 PRJNA222400 2747 289 1.116667 3.22716763 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 117 9.35e-22   NTclustered gi|470428251|ref|XM_004338026.1| 1257118 g2714 i0 75.983 0.792387543252595 229 53 79 2 3 230 665 438 Acanthamoeba castellanii str. Neff TolAlike protein (ACA1_224400), partial mRNA blastn 229 117 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8020651 8020651 PRJNA222400_P_NODE_827_length_566_cov_11.206963_g796_i0 PRJNA222400 827 566 11.206963 63.43141058 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 231 6.6799999999999995e-56   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g796 i0 80.464 53.0547703180212 302 59 53 0 125 426 422 121 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 30029 231 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11259738 11259738 PRJNA222400_P_NODE_629_length_652_cov_4.540630_g599_i0 PRJNA222400 629 652 4.54063 29.6049076 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 392 3.36e-104   NTclustered gi|330805712|ref|XM_003290775.1| 5786 g599 i0 86.895 146.177914110429 351 44 56 2 1 350 183 532 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_92560), mRNA blastn 95308 392 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
11845798 11845798 PRJNA222400_P_NODE_510_length_716_cov_18.607196_g481_i0 PRJNA222400 510 716 18.607196 133.22752336 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 374 1.35e-98   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g481 i0 79.235 64.7723463687151 549 104 76 8 28 571 1 544 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 46377 374 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14396239 14396239 PRJNA222400_P_NODE_2632_length_297_cov_2.310484_g2599_i0 PRJNA222400 2632 297 2.310484 6.86213748 Physarum polycephalum 5791 Evosea other_Eukaryota 252 2.53e-62   NTclustered gi|156151273|dbj|AB300196.1| 5791 g2599 i0 83.456 90.6936026936027 272 43 91 2 24 294 1478 1208 Physarum polycephalum hsp90 mRNA for heat shock protein 90, partial cds blastn 26936 252 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
14396309 14396309 PRJNA222400_P_NODE_872_length_552_cov_1.966203_g841_i0 PRJNA222400 872 552 1.966203 10.85344056 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 71.3 1.5e-7   NTclustered gi|470394136|ref|XM_004334911.1| 1257118 g841 i0 100 7.44202898550725 38 0 7 0 111 148 1724 1687 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_096160), partial mRNA blastn 4108 71.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15670026 15670026 PRJNA222400_P_NODE_5853_length_186_cov_0.927007_g5820_i0 PRJNA222400 5853 186 0.927007 1.72423302 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 106 1.2e-18   NTclustered gi|470517203|ref|XM_004353125.1| 1257118 g5820 i0 77.966 6.17741935483871 177 33 94 5 2 175 1231 1404 Acanthamoeba castellanii str. Neff alanineglyoxylate aminotransferase (ACA1_072820), partial mRNA blastn 1149 106 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16944469 16944469 PRJNA222400_P_NODE_2894_length_278_cov_3.567686_g2861_i0 PRJNA222400 2894 278 3.567686 9.91816708 Acytostelium subglobosum 361139 Evosea other_Eukaryota 315 2.96e-81   NTclustered gi|831753561|ref|XM_012892397.1| 1410327 g2861 i0 89.879 81.9064748201439 247 22 88 2 1 244 252 6 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 22770 315 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
16944533 16944533 PRJNA222400_P_NODE_874_length_551_cov_4.663347_g843_i0 PRJNA222400 874 551 4.663347 25.69504197 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.004   NTclustered gi|470378920|ref|XM_004333477.1| 1257118 g843 i0 94.444 0.0653357531760436 36 2 7 0 114 149 78 43 Acanthamoeba castellanii str. Neff Actobindin, putative (ACA1_256510), partial mRNA blastn 36 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18218870 18218870 PRJNA222400_P_NODE_475_length_739_cov_2.794203_g448_i0 PRJNA222400 475 739 2.794203 20.64916017 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 340 1.41e-88   NTclustered gi|470375091|ref|XM_004333111.1| 1257118 g448 i0 78.153 43.8998646820027 563 100 75 14 1 557 1315 1860 Acanthamoeba castellanii str. Neff high molecular weight heat shock protein (ACA1_387860), partial mRNA blastn 32442 340 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18218876 18218876 PRJNA222400_P_NODE_5075_length_198_cov_1.389262_g5042_i0 PRJNA222400 5075 198 1.389262 2.75073876 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 182 2.0999999999999996e-41   NTclustered gi|470439766|ref|XM_004339180.1| 1257118 g5042 i0 85.965 7.35353535353535 171 22 86 2 27 196 916 1085 Acanthamoeba castellanii str. Neff Inositol3-phosphate synthase (ACA1_058810), partial mRNA blastn 1456 182 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19493206 19493206 PRJNA222400_P_NODE_76_length_1523_cov_5.199457_g63_i0 PRJNA222400 76 1523 5.199457 79.18773011 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 966 0   NTclustered gi|470484553|ref|XM_004344028.1| 1257118 g63 i0 80.045 53.0065659881812 1328 245 87 17 137 1454 96 1413 Acanthamoeba castellanii str. Neff Sadenosyl-L-homocysteine hydrolase, putative (ACA1_054200), partial mRNA blastn 80729 966 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20768710 20768710 PRJNA222400_P_NODE_2937_length_276_cov_1.334802_g2904_i0 PRJNA222400 2937 276 1.334802 3.68405352 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 147 1.13e-30   NTclustered gi|470439750|ref|XM_004339178.1| 1257118 g2904 i0 76.978 5.34782608695652 278 50 98 10 6 276 13 283 Acanthamoeba castellanii str. Neff GDPassociated inhibitor, putative (ACA1_058790), partial mRNA blastn 1476 147 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22043845 22043845 PRJNA222400_P_NODE_9498_length_160_cov_2.333333_g9465_i0 PRJNA222400 9498 160 2.333333 3.7333328 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 75 2.83e-9   NTclustered gi|470455059|ref|XM_004340857.1| 1257118 g9465 i0 75.472 1.925 159 35 98 4 1 157 2171 2327 Acanthamoeba castellanii str. Neff clathrin heavy chain, putative (ACA1_167070), partial mRNA blastn 308 75 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22733313 22733313 PRJNA222400_P_NODE_7318_length_169_cov_0.866667_g7285_i0 PRJNA222400 7318 169 0.866667 1.46466723 Cochliopodium 313557 Discosea other_Eukaryota 285 1.28e-72   NTclustered gi|59876024|gb|AY785057.1| 313998 g7285 i0 99.363 70.8284023668639 157 1 93 0 13 169 1265 1421 Cochliopodium sp. strain Kiel 18S ribosomal RNA gene, partial sequence blastn 11970 285 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. strain Kiel
23319268 23319268 PRJNA222400_P_NODE_4499_length_209_cov_1.762500_g4466_i0 PRJNA222400 4499 209 1.7625 3.683625 Dictyostelium discoideum 44689 Evosea other_Eukaryota 158 3.77e-34   NTclustered gi|66817211|ref|XM_637392.1| 352472 g4466 i0 89.062 17.822966507177 128 13 61 1 56 182 184 311 Dictyostelium discoideum AX4 60S ribosomal protein L4 (rpl4) mRNA, complete cds blastn 3725 158 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
23319269 23319269 PRJNA222400_P_NODE_459_length_748_cov_1.716738_g432_i0 PRJNA222400 459 748 1.716738 12.84120024 Acytostelium subglobosum 361139 Evosea other_Eukaryota 457 1.36e-123   NTclustered gi|831769224|ref|XM_012897186.1| 1410327 g432 i0 79.167 78.171122994652407 672 131 89 7 13 678 687 19 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 58472 457 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;