RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA217180" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA217180 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5470429 5470429 PRJNA217180_P_NODE_10145_length_185_cov_1.875000_g10045_i0 PRJNA217180 10145 185 1.875 3.46875 Vavraia culicis 103449 Fungi Fungi 231 1.89e-56   NTclustered gi|667636757|ref|XR_552273.1| 948595 g10045 i0 93.038 11.6540540540541 158 11 85 0 28 185 814 971 Vavraia culicis subsp. floridensis 28S ribosomal RNA (VCUG_02832), partial rRNA blastn 2156 231 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Vavraia Vavraia culicis
13120916 13120916 PRJNA217180_P_NODE_5351_length_251_cov_1.757426_g5251_i0 PRJNA217180 5351 251 1.757426 4.41113926 Pleistophora mulleri 249366 Fungi Fungi 265 2.68e-66   NTclustered gi|134147422|gb|EF119339.1| 249366 g5251 i0 85.827 12.6573705179283 254 30 100 6 1 251 2336 2586 Pleistophora mulleri 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 3177 265 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Pleistophora Pleistophora mulleri
15669900 15669900 PRJNA217180_P_NODE_233_length_1224_cov_6.559149_g184_i0 PRJNA217180 233 1224 6.559149 80.28398376 Pseudoloma neurophilia 146866 Fungi Fungi 2254 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g184 i0 99.837 92.0482026143791 1224 2 100 0 1 1224 1235 12 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 112667 2254 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
16358464 16358464 PRJNA217180_P_NODE_6533_length_229_cov_12.311111_g6433_i0 PRJNA217180 6533 229 12.311111 28.19244419 Pleistophoridae 35232 Fungi Fungi 252 1.88e-62   NTclustered gi|27448231|gb|AF387331.1| 184033 g6433 i0 86.638 49.6593886462882 232 26 100 4 1 229 2102 1873 Heterosporis anguillarum small subunit ribosomal RNA gene, internal transcribed spacer, and large subunit ribosomal RNA gene, complete sequence blastn 11372 252 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Heterosporis Heterosporis anguillarum
17633654 17633654 PRJNA217180_P_NODE_2534_length_358_cov_2.951456_g2434_i0 PRJNA217180 2534 358 2.951456 10.56621248 Heterosporis 157917 Fungi Fungi 499 1.01e-136   NTclustered gi|448278452|gb|KC137548.1| 1289055 g2434 i0 91.922 57.7486033519553 359 25 99 3 1 357 3092 3448 Heterosporis sp. NBDP-2013a isolate MN/WAE small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20674 499 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Heterosporis Heterosporis sp. NBDP-2013a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;