RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA217180" and tax_phylum = "Bacillota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA217180 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4194181 4194181 PRJNA217180_P_NODE_14364_length_163_cov_0.894737_g14264_i0 PRJNA217180 14364 163 0.894737 1.45842131 Streptococcus cristatus 45634 Bacteria Bacteria 291 2.64e-74   NTclustered gi|1823511124|gb|CP050133.1| 889201 g14264 i0 98.773 96.4662576687117 163 2 100 0 1 163 2020424 2020586 Streptococcus cristatus ATCC 51100 chromosome, complete genome blastn 15724 291 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus cristatus
8708744 8708744 PRJNA217180_P_NODE_8347_length_204_cov_1.548387_g8247_i0 PRJNA217180 8347 204 1.548387 3.15870948 Geobacillus 129337 Bacteria Bacteria 377 2.59e-100   NTclustered gi|2529062746|gb|CP128458.1| 1422 g8247 i0 100 918.470588235294 204 0 100 0 1 204 14224 14427 Geobacillus stearothermophilus strain EF60133 chromosome, complete genome blastn 187368 377 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Anoxybacillaceae Geobacillus Geobacillus stearothermophilus
14396141 14396141 PRJNA217180_P_NODE_13332_length_165_cov_0.879310_g13232_i0 PRJNA217180 13332 165 0.87931 1.4508615 Candidatus Avichristensenella intestinipullorum 2840693 Bacteria Bacteria 54.7 0.004   NTclustered gi|2729058690|emb|OZ006990.1| 2840693 g13232 i0 94.444 0.218181818181818 36 1 22 1 92 127 2040746 2040712 MAG: Candidatus Avichristensenella intestinipullorum isolate metabat2_pooled_hifiasm.151 MAG genome assembly, chromosome: 1 blastn 36 54.7 1 Bacteria   Bacillati Bacillota Clostridia     Candidatus Avichristensenella Candidatus Avichristensenella intestinipullorum
18907502 18907502 PRJNA217180_P_NODE_13475_length_165_cov_0.879310_g13375_i0 PRJNA217180 13475 165 0.87931 1.4508615 Streptococcus 1301 Bacteria Bacteria 305 9.59e-79   NTclustered gi|1782758915|gb|CP018189.1| 1304 g13375 i0 100 563.163636363636 165 0 100 0 1 165 17959 18123 Streptococcus salivarius strain ICDC3 chromosome, complete genome blastn 92922 305 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius
23319144 23319144 PRJNA217180_P_NODE_10079_length_186_cov_1.138686_g9979_i0 PRJNA217180 10079 186 1.138686 2.11795596 Staphylococcus cohnii 29382 Bacteria Bacteria 344 2.34e-90   NTclustered gi|1373834432|emb|LT963440.1| 29382 g9979 i0 100 54.2311827956989 186 0 100 0 1 186 1302308 1302493 Staphylococcus cohnii isolate Staphylococcus cohnii ATCC 29974 genome assembly, chromosome: I blastn 10087 344 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus cohnii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;