RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA217180" and tax_kingdom = "Bamfordvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bamfordvirae · 3 ✖

bioproject 1

  • PRJNA217180 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7433951 7433951 PRJNA217180_P_NODE_806_length_671_cov_106.699357_g714_i0 PRJNA217180 806 671 106.699357 715.95268547 root 1 Root_unresolved Root_unresolved 793 0   NTclustered gi|2620236085|gb|OR777220.1| 10515 g714 i0 95.565 78.1698956780924 496 20 85 2 173 667 15223 14729 Human adenovirus 2 isolate HAdV-C2/USA/13R1/2017, complete genome blastn 52452 793 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
8708739 8708739 PRJNA217180_P_NODE_3447_length_305_cov_6.628906_g3347_i0 PRJNA217180 3447 305 6.628906 20.2181633 root 1 Root_unresolved Root_unresolved 555 1.7799999999999996e-153   NTclustered gi|2452970428|gb|OQ518271.1| 10515 g3347 i0 100 98.3606557377049 300 0 98 0 6 305 14427 14726 Human adenovirus 2 isolate HAdV-C2/USA/8A5/2011, complete genome blastn 30000 555 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
15083615 15083615 PRJNA217180_P_NODE_2072_length_404_cov_5.340845_g1972_i0 PRJNA217180 2072 404 5.340845 21.5770138 root 1 Root_unresolved Root_unresolved 719 0   NTclustered gi|2079660852|emb|OU501478.1| 10515 g1972 i0 100 96.2871287128713 389 0 96 0 12 400 15378 15766 Human adenovirus 2 isolate ADVJA-00-BE genome assembly, chromosome: ADVJA-00-BE blastn 38900 719 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;