RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA207719" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA207719 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6158752 6158752 PRJNA207719_P_NODE_905_length_201_cov_3.046512_g885_i0 PRJNA207719 905 201 3.046512 6.12348912 Gyrodactylidae 37845 Platyhelminthes Platyhelminthes 355 1.19e-93   NTclustered gi|44885231|emb|AJ542394.1| 37629 g885 i0 98.515 102.194029850746 202 2 100 1 1 201 3192 2991 Gyrodactylus salaris 28S rRNA gene blastn 20541 355 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Gyrodactylidea Gyrodactylidae Gyrodactylus Gyrodactylus salaris
24593298 24593298 PRJNA207719_P_NODE_400_length_330_cov_2.109635_g380_i0 PRJNA207719 400 330 2.109635 6.9617955 Macrogyrodactylus karibae 696689 Platyhelminthes Platyhelminthes 383 9.699999999999998e-102   NTclustered gi|1346678829|gb|MG973078.1| 696689 g380 i0 87.651 35.9757575757576 332 38 100 3 1 330 6235 6565 Macrogyrodactylus karibae isolate M_ka small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11872 383 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Gyrodactylidea Gyrodactylidae Macrogyrodactylus Macrogyrodactylus karibae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;