RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA207719" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA207719 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8020476 8020476 PRJNA207719_P_NODE_827_length_215_cov_2.752688_g807_i0 PRJNA207719 827 215 2.752688 5.9182792 Myxine glutinosa 7769 Chordata Chordata 167 6.489999999999999e-37   NTclustered gi|2797614140|ref|XM_068114044.1| 7769 g807 i0 81.463 48.046511627907 205 36 95 2 1 204 304 101 PREDICTED: Myxine glutinosa elongation factor 1-alpha 2-like (LOC137425524), mRNA blastn 10330 167 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
16358452 16358452 PRJNA207719_P_NODE_1333_length_152_cov_1.252033_g1313_i0 PRJNA207719 1333 152 1.252033 1.90309016 Dryophytes 1926313 Chordata Chordata 172 9.14e-39   NTclustered gi|29243191|dbj|AB092520.1| 109175 g1313 i0 87.333 97.0657894736842 150 19 99 0 1 150 171 320 Hyla japonica ACTB2 mRNA for beta-actin 2, partial cds blastn 14754 172 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Dryophytes Dryophytes japonicus
18218733 18218733 PRJNA207719_P_NODE_695_length_240_cov_2.687204_g675_i0 PRJNA207719 695 240 2.687204 6.4492896 Scyliorhinus canicula 7830 Chordata Chordata 185 2.04e-42   NTclustered gi|1032562239|gb|KU310672.1| 7830 g675 i0 83.417 54.0458333333333 199 33 83 0 8 206 406 208 Scyliorhinus canicula eukaryotic translation elongation factor 1 alpha 1 (Eef1a1) mRNA, complete cds blastn 12971 185 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;