RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA207719" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA207719 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3606525 3606525 PRJNA207719_P_NODE_923_length_199_cov_3.023529_g903_i0 PRJNA207719 923 199 3.023529 6.01682271 Cetobacterium 180162 Bacteria Bacteria 363 7.019999999999998e-96   NTclustered gi|2865368125|gb|CP122294.1| 188913 g903 i0 99.497 456.29648241206 199 1 100 0 1 199 279242 279440 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 90803 363 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
13809445 13809445 PRJNA207719_P_NODE_731_length_232_cov_4.847291_g711_i0 PRJNA207719 731 232 4.847291 11.24571512 Cetobacterium 180162 Bacteria Bacteria 429 8.2e-116   NTclustered gi|2865368125|gb|CP122294.1| 188913 g711 i0 100 518.034482758621 232 0 100 0 1 232 279226 278995 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 120184 429 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
20768585 20768585 PRJNA207719_P_NODE_877_length_206_cov_3.779661_g857_i0 PRJNA207719 877 206 3.779661 7.78610166 Cetobacterium somerae 188913 Bacteria Bacteria 351 1.5899999999999995e-92   NTclustered gi|2865366169|gb|CP122292.1| 188913 g857 i0 97.573 57.004854368932 206 4 100 1 1 206 420366 420162 Cetobacterium somerae strain MSU41 chromosome, complete genome blastn 11743 351 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
23319143 23319143 PRJNA207719_P_NODE_879_length_206_cov_2.254237_g859_i0 PRJNA207719 879 206 2.254237 4.64372822 Cetobacterium somerae 188913 Bacteria Bacteria 381 2.0199999999999994e-101   NTclustered gi|2666488225|gb|CP143319.1| 188913 g859 i0 100 478.791262135922 206 0 100 0 1 206 1318764 1318969 Cetobacterium somerae strain ceto chromosome, complete genome blastn 98631 381 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;