RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA207719" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA207719 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5470427 5470427 PRJNA207719_P_NODE_1185_length_167_cov_3.275362_g1165_i0 PRJNA207719 1185 167 3.275362 5.46985454 Leishmania tarentolae 5689 Euglenozoa other_Eukaryota 126 8.14e-25   NTclustered gi|226347434|gb|FJ807257.1| 5689 g1165 i0 82.517 64.6347305389222 143 25 86 0 25 167 616 758 Leishmania tarentolae strain UC elongation factor 1 alpha gene, partial cds blastn 10794 126 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania tarentolae
9295144 9295144 PRJNA207719_P_NODE_1048_length_183_cov_2.532468_g1028_i0 PRJNA207719 1048 183 2.532468 4.63441644 Porcisia hertigi 2761500 Euglenozoa other_Eukaryota 150 5.37e-32   NTclustered gi|2794823184|ref|XM_067903787.1| 2761500 g1028 i0 81.667 2.85792349726776 180 33 98 0 2 181 1725 1546 Porcisia hertigi uncharacterized protein (JKF63_07859), partial mRNA blastn 523 150 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Porcisia Porcisia hertigi
10571136 10571136 PRJNA207719_P_NODE_9_length_1573_cov_9.101036_g8_i0 PRJNA207719 9 1573 9.101036 143.15929628 Bodo saltans 75058 Euglenozoa other_Eukaryota 1188 0   NTclustered gi|206598103|gb|FJ168548.1| 75058 g8 i0 82.213 83.8792116973935 1383 242 88 4 151 1531 21131 19751 Bodo saltans clone fosmid 14L17, complete sequence blastn 131942 1188 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
23319141 23319141 PRJNA207719_P_NODE_1199_length_166_cov_2.160584_g1179_i0 PRJNA207719 1199 166 2.160584 3.58656944 Ichthyobodo sp. XV TEI-2012 1275978 Euglenozoa other_Eukaryota 261 2.12e-65   NTclustered gi|433352097|gb|JQ821346.1| 1275978 g1179 i0 98 80.144578313253 150 3 90 0 17 166 1437 1586 Ichthyobodo sp. XV TEI-2012 isolate CF1 18S ribosomal RNA gene, partial sequence blastn 13304 261 1 Eukaryota Discoba   Euglenozoa Kinetoplastea   Ichthyobodonidae Ichthyobodo Ichthyobodo sp. XV TEI-2012

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;