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contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA207343" and tax_kingdom = "Fungi"

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tax_superkingdom 1

tax_kingdom 1

  • Fungi · 21 ✖

tax_clade 1

bioproject 1

  • PRJNA207343 · 21 ✖

analysis 1

  • blastn · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
366841 366841 PRJNA207343_S_NODE_3261_length_462_cov_247.294118_g2729_i0 PRJNA207343 3261 462 247.294118 1142.49882516 uncultured Verrucisporota 1193708 Fungi Fungi 75 9.57e-9   NTclustered gi|453201931|gb|JQ999839.1| 1193708 g2729 i0 100 8.26190476190476 40 0 9 0 423 462 148 109 Uncultured Verrucisporota clone GKJWQY101BHR5R 28S ribosomal RNA gene, partial sequence blastn 3817 75 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Mycosphaerellales Mycosphaerellaceae   uncultured Verrucisporota
366957 366957 PRJNA207343_S_NODE_6721_length_236_cov_6.502513_g6184_i0 PRJNA207343 6721 236 6.502513 15.34593068 uncultured fungus 175245 Fungi Fungi 388 1.42e-103   NTclustered gi|2159204460|emb|OU942862.1| 175245 g6184 i0 97.368 21.0127118644068 228 6 97 0 9 236 1270 1497 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus04155 blastn 4959 388 1 Eukaryota Opisthokonta Fungi           uncultured fungus
366968 366968 PRJNA207343_S_NODE_7101_length_224_cov_4.342246_g6564_i0 PRJNA207343 7101 224 4.342246 9.72663104 Pseudoloma neurophilia 146866 Fungi Fungi 372 1.35e-98   NTclustered gi|11993647|gb|AF322654.1| 146866 g6564 i0 99.51 69.8928571428571 204 1 91 0 11 214 1111 1314 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15656 372 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
1641760 1641760 PRJNA207343_S_NODE_7002_length_227_cov_6.515789_g6465_i0 PRJNA207343 7002 227 6.515789 14.79084103 Leucosporidium scottii 5278 Fungi Fungi 409 1.04e-109   NTclustered gi|1358186634|gb|MH047191.1| 5278 g6465 i0 99.119 98.1409691629956 227 2 100 0 1 227 4022 3796 Leucosporidium scottii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22278 409 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Leucosporidiales Leucosporidiaceae Leucosporidium Leucosporidium scottii
1641845 1641845 PRJNA207343_S_NODE_9682_length_172_cov_4.140741_g9145_i0 PRJNA207343 9682 172 4.140741 7.12207452 Sporobolomyces roseus 40563 Fungi Fungi 279 6.08e-71   NTclustered gi|111283897|gb|DQ832234.1| 40563 g9145 i0 100 94.7151162790698 151 0 88 0 22 172 1402 1252 Sporobolomyces roseus AFTOL-ID 1549 25S large subunit ribosomal RNA gene, partial sequence blastn 16291 279 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces roseus
3606297 3606297 PRJNA207343_S_NODE_10903_length_157_cov_3.075000_g10366_i0 PRJNA207343 10903 157 3.075 4.82775 root 1 Root_unresolved Root_unresolved 259 7.11e-65   NTclustered gi|283827952|gb|EU019262.2| 29917 g10366 i0 100 89.171974522293 140 0 89 0 8 147 2549 2410 Cladosporium cladosporioides strain CBS 109.21 28S large subunit ribosomal RNA gene, partial sequence blastn 14000 259 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Cladosporiales Cladosporiaceae Cladosporium Cladosporium cladosporioides
4193841 4193841 PRJNA207343_S_NODE_10224_length_165_cov_2.304688_g9687_i0 PRJNA207343 10224 165 2.304688 3.8027352 Pseudoloma neurophilia 146866 Fungi Fungi 298 1.61e-76   NTclustered gi|11993647|gb|AF322654.1| 146866 g9687 i0 100 88.9272727272727 161 0 98 0 1 161 1964 1804 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14673 298 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
5470401 5470401 PRJNA207343_S_NODE_9165_length_180_cov_3.349650_g8628_i0 PRJNA207343 9165 180 3.34965 6.02937 Rhodotorula glutinis 5535 Fungi Fungi 180 6.71e-41   NTclustered gi|225134685|gb|FJ345357.1| 5535 g8628 i0 87.261 8.07222222222222 157 20 87 0 12 168 2774 2618 Rhodotorula glutinis strain ATCC 16726 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1453 180 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula glutinis
9295056 9295056 PRJNA207343_S_NODE_7088_length_224_cov_12.459893_g6551_i0 PRJNA207343 7088 224 12.459893 27.91016032 uncultured fungus 175245 Fungi Fungi 409 1.03e-109   NTclustered gi|2159203573|emb|OU941983.1| 175245 g6551 i0 99.554 100.910714285714 224 1 100 0 1 224 1755 1532 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus03277 blastn 22604 409 1 Eukaryota Opisthokonta Fungi           uncultured fungus
11259064 11259064 PRJNA207343_S_NODE_11009_length_156_cov_2.579832_g10472_i0 PRJNA207343 11009 156 2.579832 4.02453792 Eukaryota 2759 Fungi Fungi 254 3.28e-63   NTclustered gi|583831563|gb|KF565126.1| 175245 g10472 i0 97.945 93.224358974359 146 3 94 0 11 156 163 308 Uncultured soil fungus clone NCD_LSU_otu156 28S ribosomal RNA gene, partial sequence blastn 14543 254 1 Eukaryota Opisthokonta Fungi           uncultured fungus
11259184 11259184 PRJNA207343_S_NODE_6869_length_232_cov_1.671795_g6332_i0 PRJNA207343 6869 232 1.671795 3.8785644 Sporobolomyces 5429 Fungi Fungi 429 8.2e-116   NTclustered gi|189418985|gb|EU723502.1| 5002 g6332 i0 100 100 232 0 100 0 1 232 17 248 Sporidiobolus johnsonii isolate NIOCC Y4 18S ribosomal RNA gene, partial sequence blastn 23200 429 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces johnsonii
13120696 13120696 PRJNA207343_S_NODE_4511_length_346_cov_17.210356_g3974_i0 PRJNA207343 4511 346 17.210356 59.54783176 uncultured fungus 175245 Fungi Fungi 143 1.89e-29   NTclustered gi|583833061|gb|KF566624.1| 175245 g3974 i0 82.584 33.7225433526012 178 15 51 11 1 176 52 215 Uncultured soil fungus clone NCD_LSU_otu1654 28S ribosomal RNA gene, partial sequence blastn 11668 143 1 Eukaryota Opisthokonta Fungi           uncultured fungus
13120831 13120831 PRJNA207343_S_NODE_8331_length_195_cov_1.462025_g7794_i0 PRJNA207343 8331 195 1.462025 2.85094875 Blastocladiella sp. 2169676 Fungi Fungi 62.1 2.8e-5   NTclustered gi|1866582625|gb|MT730800.1| 2169676 g7794 i0 97.222 1.39487179487179 36 1 18 0 160 195 4135 4170 Blastocladiella sp. isolate JEL0735 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 272 62.1 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella sp.
15669570 15669570 PRJNA207343_S_NODE_10633_length_160_cov_2.357724_g10096_i0 PRJNA207343 10633 160 2.357724 3.7723584 Pseudoloma neurophilia 146866 Fungi Fungi 292 7.18e-75   NTclustered gi|11993647|gb|AF322654.1| 146866 g10096 i0 99.375 95.25625 160 1 100 0 1 160 753 594 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15241 292 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
16944178 16944178 PRJNA207343_S_NODE_4774_length_328_cov_106.646048_g4237_i0 PRJNA207343 4774 328 106.646048 349.79903744 uncultured fungus 175245 Fungi Fungi 385 2.68e-102   NTclustered gi|408354934|gb|JX534927.1| 175245 g4237 i0 99.526 64.234756097561 211 1 64 0 28 238 6 216 Uncultured fungus clone WMU_D12-34 28S ribosomal RNA gene, partial sequence blastn 21069 385 1 Eukaryota Opisthokonta Fungi           uncultured fungus
17633606 17633606 PRJNA207343_S_NODE_8034_length_201_cov_5.012195_g7497_i0 PRJNA207343 8034 201 5.012195 10.07451195 Fungi 4751 Fungi Fungi 296 7.31e-76   NTclustered gi|61397691|gb|AY818988.1| 91647 g7497 i0 93.532 99.9950248756219 201 9 100 4 1 201 1105 909 Tilletia iowensis voucher BPI 28S ribosomal RNA gene, partial sequence blastn 20099 296 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Tilletiales Tilletiaceae Tilletia Tilletia iowensis
17633610 17633610 PRJNA207343_S_NODE_8174_length_198_cov_6.577640_g7637_i0 PRJNA207343 8174 198 6.57764 13.0237272 Basidiomycota 5204 Fungi Fungi 357 3.25e-94   NTclustered gi|8096249|dbj|AB021694.1| 5003 g7637 i0 100 97.2777777777778 193 0 97 0 1 193 1417 1609 Sporidiobolus pararoseus gene for 18S ribosomal RNA, partial sequence blastn 19261 357 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces pararoseus
18218680 18218680 PRJNA207343_S_NODE_8235_length_197_cov_2.725000_g7698_i0 PRJNA207343 8235 197 2.725 5.36825 Rhodotorula glutinis 5535 Fungi Fungi 344 2.51e-90   NTclustered gi|1394846613|gb|MH427374.1| 5535 g7698 i0 98.958 101.89847715736 192 2 97 0 1 192 197 388 Rhodotorula glutinis strain SY01 large subunit ribosomal RNA gene, partial sequence blastn 20074 344 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula glutinis
21457701 21457701 PRJNA207343_S_NODE_6117_length_257_cov_9.159091_g5580_i0 PRJNA207343 6117 257 9.159091 23.53886387 Basidiomycota 5204 Fungi Fungi 472 1.51e-128   NTclustered gi|1240939304|gb|MF927664.1| 40563 g5580 i0 100 99.2217898832685 255 0 99 0 1 255 429 175 Sporobolomyces roseus strain KBP:Y-5432 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 25500 472 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces roseus
22043557 22043557 PRJNA207343_S_NODE_7078_length_225_cov_2.404255_g6541_i0 PRJNA207343 7078 225 2.404255 5.40957375 Leucosporidium scottii 5278 Fungi Fungi 348 2.28e-91   NTclustered gi|1358186634|gb|MH047191.1| 5278 g6541 i0 96.226 102.635555555556 212 8 94 0 14 225 4210 3999 Leucosporidium scottii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23093 348 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Leucosporidiales Leucosporidiaceae Leucosporidium Leucosporidium scottii
22732765 22732765 PRJNA207343_S_NODE_7938_length_203_cov_7.228916_g7401_i0 PRJNA207343 7938 203 7.228916 14.67469948 Basidiomycota 5204 Fungi Fungi 342 9.369999999999999e-90   NTclustered gi|92111142|gb|DQ459616.1| 5003 g7401 i0 98.953 94.0886699507389 191 2 94 0 5 195 268 78 Sporidiobolus pararoseus isolate C44 18S small subunit ribosomal RNA gene, partial sequence blastn 19100 342 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces pararoseus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;