RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA206070" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA206070 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14395461 14395461 PRJNA206070_S_NODE_23352_length_182_cov_2.372414_g21476_i0 PRJNA206070 23352 182 2.372414 4.31779348 Fontisphaera persica 2974023 Bacteria Bacteria 281 1.81e-71   NTclustered gi|2439237958|gb|CP116615.1| 2974023 g21476 i0 94.505 175.065934065934 182 10 100 0 1 182 3861982 3861801 Fontisphaera persica strain B-154 chromosome, complete genome blastn 31862 281 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica
19492244 19492244 PRJNA206070_S_NODE_17696_length_229_cov_1.010417_g15820_i0 PRJNA206070 17696 229 1.010417 2.31385493 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 204 5.33e-48   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g15820 i0 83.111 0.982532751091703 225 36 98 2 4 227 3216694 3216471 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 225 204 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
23318177 23318177 PRJNA206070_S_NODE_11399_length_339_cov_2.711921_g9523_i0 PRJNA206070 11399 339 2.711921 9.19341219 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 409 1.65e-109   NTclustered gi|2874253690|emb|OY969416.1| 412056 g9523 i0 88.596 73.2153392330383 342 32 99 7 1 338 1315941 1316279 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 24820 409 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;