RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA206070" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA206070 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
366424 366424 PRJNA206070_S_NODE_26241_length_167_cov_2.546154_g24365_i0 PRJNA206070 26241 167 2.546154 4.25207718 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 213 6.07e-51   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g24365 i0 89.881 7.9940119760479 168 14 99 2 1 165 1867601 1867768 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 1335 213 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
18218195 18218195 PRJNA206070_S_NODE_31275_length_151_cov_1.245614_g29399_i0 PRJNA206070 31275 151 1.245614 1.88087714 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 171 3.26e-38   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g29399 i0 87.662 31.5364238410596 154 10 99 3 2 151 7050665 7050813 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 4762 171 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
23318377 23318377 PRJNA206070_S_NODE_19219_length_213_cov_1.875000_g17343_i0 PRJNA206070 19219 213 1.875 3.99375 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 302 1.69e-77   NTclustered gi|2874254106|emb|OY970189.1| 100233 g17343 i0 92.891 43.0046948356808 211 10 98 4 1 209 4317533 4317326 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 9160 302 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;