RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA206070" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA206070 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6158439 6158439 PRJNA206070_S_NODE_29545_length_156_cov_0.983193_g27669_i0 PRJNA206070 29545 156 0.983193 1.53378108 Methanobrevibacter 2172 Archaea Archaea 289 9e-74   NTclustered gi|2791693311|gb|CP144200.1| 2173 g27669 i0 100 81.9230769230769 156 0 100 0 1 156 1285834 1285679 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 12780 289 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
12534325 12534325 PRJNA206070_S_NODE_29830_length_155_cov_1.203390_g27954_i0 PRJNA206070 29830 155 1.20339 1.8652545 Methanosphaera 2316 Archaea Archaea 287 3.21e-73   NTclustered gi|1721134173|emb|LR698975.1| 2317 g27954 i0 100 103.006451612903 155 0 100 0 1 155 409022 409176 Methanosphaera stadtmanae isolate MGYG-HGUT-02164 genome assembly, chromosome: 1 blastn 15966 287 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae
22043033 22043033 PRJNA206070_S_NODE_24858_length_174_cov_1.423358_g22982_i0 PRJNA206070 24858 174 1.423358 2.47664292 Methanosphaera stadtmanae 2317 Archaea Archaea 322 1.01e-83   NTclustered gi|1721134173|emb|LR698975.1| 2317 g22982 i0 100 9.98275862068965 174 0 100 0 1 174 411055 411228 Methanosphaera stadtmanae isolate MGYG-HGUT-02164 genome assembly, chromosome: 1 blastn 1737 322 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;