RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA206070" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA206070 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
366415 366415 PRJNA206070_S_NODE_25721_length_170_cov_1.172932_g23845_i0 PRJNA206070 25721 170 1.172932 1.9939844 uncultured Chloroflexota bacterium 166587 Bacteria Bacteria 243 7.859999999999999e-60   NTclustered gi|392522419|gb|JX041847.1| 166587 g23845 i0 92.529 59.6941176470588 174 5 100 6 1 170 48 217 Uncultured Chloroflexi bacterium clone APC_4_H3 16S ribosomal RNA gene, partial sequence blastn 10148 243 1 Bacteria   Bacillati Chloroflexota         uncultured Chloroflexota bacterium
1641037 1641037 PRJNA206070_S_NODE_17782_length_228_cov_1.685864_g15906_i0 PRJNA206070 17782 228 1.685864 3.84376992 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 132 2.54e-26   NTclustered gi|2621704004|emb|OY762959.1| 2026734 g15906 i0 83.562 43.8508771929825 146 19 63 4 23 166 630895 630753 MAG: Dehalococcoidia bacterium isolate a8fc5444-7059-4be1-bdcb-92646be6befe genome assembly, chromosome: 1 blastn 9998 132 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;