RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA206070" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA206070 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
366494 366494 PRJNA206070_S_NODE_29861_length_155_cov_1.000000_g27985_i0 PRJNA206070 29861 155 1 1.55 uncultured Granulicella sp. 1241325 Bacteria Bacteria 193 7.2e-45   NTclustered gi|2836016418|emb|OZ196148.1| 1241325 g27985 i0 90.476 71.0709677419355 147 12 94 2 1 146 505025 504880 MAG: uncultured Granulicella sp. isolate 9057d4d9-b77b-4c6f-b84b-ea5519435b63 genome assembly, chromosome: 1 blastn 11016 193 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella uncultured Granulicella sp.
10570192 10570192 PRJNA206070_S_NODE_12569_length_310_cov_51.293040_g10693_i0 PRJNA206070 12569 310 51.29304 159.008424 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 117 1.0100000000000002e-21   NTclustered gi|2874253852|emb|OY969908.1| 194844 g10693 i0 79.518 0.535483870967742 166 32 53 2 8 172 3113629 3113793 MAG: uncultured Acidobacteriaceae bacterium isolate MFD09286.bin.1.44 genome assembly, chromosome: 1 blastn 166 117 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
20181716 20181716 PRJNA206070_S_NODE_24836_length_174_cov_1.569343_g22960_i0 PRJNA206070 24836 174 1.569343 2.73065682 Acidobacteriaceae 204434 Bacteria Bacteria 193 8.269999999999999e-45   NTclustered gi|1431854037|gb|CP030840.1| 2211140 g22960 i0 95.161 39.6379310344828 124 3 71 3 36 158 1123229 1123350 Acidisarcina polymorpha strain SBC82 chromosome, complete genome blastn 6897 193 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidisarcina Acidisarcina polymorpha

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;