RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA206070" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA206070 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6158385 6158385 PRJNA206070_S_NODE_24385_length_176_cov_3.755396_g22509_i0 PRJNA206070 24385 176 3.755396 6.60949696 Fusobacterium 848 Bacteria Bacteria 315 1.7199999999999996e-81   NTclustered gi|2705038125|gb|CP084158.1| 851 g22509 i0 98.864 487.977272727273 176 2 100 0 1 176 1992424 1992249 Fusobacterium nucleatum strain KCOM2312 chromosome, complete genome blastn 85884 315 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
8019895 8019895 PRJNA206070_S_NODE_29147_length_157_cov_1.250000_g27271_i0 PRJNA206070 29147 157 1.25 1.9625 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 246 5.54e-61   NTclustered gi|922689899|gb|CP012410.1| 712357 g27271 i0 94.904 32.1656050955414 157 8 100 0 1 157 53030 53186 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 5050 246 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
11258876 11258876 PRJNA206070_S_NODE_22089_length_190_cov_2.176471_g20213_i0 PRJNA206070 22089 190 2.176471 4.1352949 Fusobacteriaceae 203492 Bacteria Bacteria 318 1.46e-82   NTclustered gi|2446175567|gb|CP117964.1| 851 g20213 i0 96.842 478.936842105263 190 6 100 0 1 190 1739384 1739573 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 90998 318 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
13809057 13809057 PRJNA206070_S_NODE_23851_length_179_cov_3.295775_g21975_i0 PRJNA206070 23851 179 3.295775 5.89943725 Fusobacterium 848 Bacteria Bacteria 315 1.75e-81   NTclustered gi|2705042081|gb|CP085192.1| 856 g21975 i0 98.324 504.703910614525 179 3 100 0 1 179 3422602 3422424 Fusobacterium varium strain SB069 chromosome blastn 90342 315 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
18217910 18217910 PRJNA206070_S_NODE_16435_length_244_cov_2.637681_g14559_i0 PRJNA206070 16435 244 2.637681 6.43594164 Cetobacterium somerae 188913 Bacteria Bacteria 368 1.92e-97   NTclustered gi|2201062197|gb|CP092519.1| 188913 g14559 i0 93.852 393.258196721311 244 15 100 0 1 244 49181 48938 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 95955 368 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
21457370 21457370 PRJNA206070_S_NODE_19937_length_206_cov_3.331361_g18061_i0 PRJNA206070 19937 206 3.331361 6.86260366 Cetobacterium 180162 Bacteria Bacteria 375 9.41e-100   NTclustered gi|2865368125|gb|CP122294.1| 188913 g18061 i0 99.515 492.970873786408 206 1 100 0 1 206 279413 279618 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 101552 375 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
22732559 22732559 PRJNA206070_S_NODE_7858_length_473_cov_3.768349_g5989_i0 PRJNA206070 7858 473 3.768349 17.82429077 Cetobacterium 180162 Bacteria Bacteria 808 0   NTclustered gi|2666488225|gb|CP143319.1| 188913 g5989 i0 97.463 496.067653276956 473 12 100 0 1 473 1317883 1317411 Cetobacterium somerae strain ceto chromosome, complete genome blastn 234640 808 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;