RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA195897" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA195897 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4193077 4193077 PRJNA195897_P_NODE_4404_length_228_cov_1.162011_g4371_i0 PRJNA195897 4404 228 1.162011 2.64938508 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 152 1.9499999999999998e-32   NTclustered gi|2621704341|emb|OY760937.1| 2499141 g4371 i0 81.967 102.780701754386 183 29 79 4 48 228 3991166 3991346 MAG: Verrucomicrobiae bacterium isolate 066a7682-a1ac-48de-8761-1470dc9e5c3e genome assembly, chromosome: 1 blastn 23434 152 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
10570075 10570075 PRJNA195897_P_NODE_5869_length_202_cov_0.941176_g5836_i0 PRJNA195897 5869 202 0.941176 1.90117552 Lacunisphaera limnophila 1838286 Bacteria Bacteria 331 2.02e-86   NTclustered gi|1070531674|gb|CP016094.1| 1838286 g5836 i0 97.906 27.2574257425743 191 4 95 0 12 202 2558392 2558582 Lacunisphaera limnophila strain IG16b, complete genome blastn 5506 331 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila
15668739 15668739 PRJNA195897_P_NODE_11573_length_164_cov_0.904348_g11540_i0 PRJNA195897 11573 164 0.904348 1.48313072 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 270 3.4699999999999992e-68   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g11540 i0 96.341 92.2560975609756 164 6 100 0 1 164 3556305 3556142 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 15130 270 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;