RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA195897" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA195897 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
365935 365935 PRJNA195897_P_NODE_11301_length_164_cov_1.243478_g11268_i0 PRJNA195897 11301 164 1.243478 2.03930392 Sycon ciliatum 27933 Porifera other_Eukaryota 132 1.71e-26   NTclustered gi|2732892047|ref|XM_065338043.1| 27933 g11268 i0 82.166 5.1219512195122 157 24 95 3 6 160 1766 1920 PREDICTED: Sycon ciliatum dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like (LOC135825301), mRNA blastn 840 132 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
1640761 1640761 PRJNA195897_P_NODE_3462_length_261_cov_1.344340_g3429_i0 PRJNA195897 3462 261 1.34434 3.5087274 Chondrosia collectrix 1090546 Porifera other_Eukaryota 202 2.2299999999999996e-47   NTclustered gi|512765402|gb|KC869640.1| 1090546 g3429 i0 88 66.9770114942529 175 15 66 5 31 203 2786 2956 Chondrosia collectrix voucher P43 28S ribosomal RNA gene, partial sequence blastn 17481 202 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Chondrillida Chondrillidae Chondrosia Chondrosia collectrix
15082828 15082828 PRJNA195897_P_NODE_132_length_1296_cov_4.242181_g120_i0 PRJNA195897 132 1296 4.242181 54.97866576 Metazoa 33208 Porifera other_Eukaryota 460 1.86e-124   NTclustered gi|2732916585|ref|XM_065325089.1| 27933 g120 i0 86.429 32.2623456790123 420 57 32 0 877 1296 1221 802 PREDICTED: Sycon ciliatum actin-2-like (LOC135811851), mRNA blastn 41812 460 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
18906751 18906751 PRJNA195897_P_NODE_8915_length_169_cov_1.300000_g8882_i0 PRJNA195897 8915 169 1.3 2.197 Mycale 86015 Porifera other_Eukaryota 97.1 6.43e-16   NTclustered gi|512765375|gb|KC869613.1| 1114237 g8882 i0 82.456 71.7455621301775 114 17 67 3 6 118 1944 1833 Mycale mirabilis voucher NCI445 28S ribosomal RNA gene, partial sequence blastn 12125 97.1 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Poecilosclerida Mycalidae Mycale Mycale mirabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;