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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA195897" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA195897 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2916672 2916672 PRJNA195897_P_NODE_4643_length_222_cov_4.346821_g4610_i0 PRJNA195897 4643 222 4.346821 9.64994262 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 287 4.96e-73   NTclustered gi|695389557|ref|XM_009521174.1| 67593 g4610 i0 90.045 289.027027027027 221 22 99 0 2 222 359 579 Phytophthora sojae hypothetical protein partial mRNA blastn 64164 287 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
3605770 3605770 PRJNA195897_P_NODE_5803_length_202_cov_1.941176_g5770_i0 PRJNA195897 5803 202 1.941176 3.92117552 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 99 2.23e-16   NTclustered gi|442591541|gb|JX115049.1| 129356 g5770 i0 77.059 2.10891089108911 170 39 84 0 22 191 233 64 Phytophthora mirabilis voucher CBS:678.85 PF16 gene, partial cds blastn 426 99 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora mirabilis
7433187 7433187 PRJNA195897_P_NODE_5766_length_203_cov_1.032468_g5733_i0 PRJNA195897 5766 203 1.032468 2.09591004 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 89.8 1.35e-13   NTclustered gi|442591581|gb|JX115069.1| 82932 g5733 i0 78.261 2.18226600985222 138 30 68 0 28 165 426 289 Pythium arrhenomanes culture CCFC:DAOM BR 983 PF16 gene, partial cds blastn 443 89.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium arrhenomanes
8019385 8019385 PRJNA195897_P_NODE_7767_length_179_cov_1.769231_g7734_i0 PRJNA195897 7767 179 1.769231 3.16692349 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 115 1.91e-21   NTclustered gi|698818146|ref|XM_009843800.1| 112090 g7734 i0 81.69 2.17877094972067 142 23 78 3 1 139 241 100 Aphanomyces astaci 40S ribosomal protein S27-like protein mRNA blastn 390 115 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
11258500 11258500 PRJNA195897_P_NODE_1189_length_488_cov_6.000000_g1158_i0 PRJNA195897 1189 488 6 29.28 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 318 4.25e-82   NTclustered gi|2795050181|ref|XM_067944756.1| 4785 g1158 i0 88.06 54.0102459016393 268 32 55 0 57 324 1 268 Phytophthora cinnamomi dynein light chain LC6, flagellar outer arm (IUM83_19694), partial mRNA blastn 26357 320 0.99375 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
15668740 15668740 PRJNA195897_P_NODE_11593_length_164_cov_0.904348_g11560_i0 PRJNA195897 11593 164 0.904348 1.48313072 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 135 1.32e-27   NTclustered gi|2794921676|ref|XM_067881069.1| 164328 g11560 i0 84.559 2.79268292682927 136 21 83 0 13 148 353 218 Phytophthora ramorum 40S ribosomal protein S8 (KRP23_10601), partial mRNA blastn 458 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
15668743 15668743 PRJNA195897_P_NODE_1193_length_487_cov_4.618721_g1162_i0 PRJNA195897 1193 487 4.618721 22.49317127 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 331 5.45e-86   NTclustered gi|2795045397|ref|XM_067939565.1| 4785 g1162 i0 89.139 53.7289527720739 267 27 55 2 57 322 1 266 Phytophthora cinnamomi dynein light chain LC6, flagellar outer arm (IUM83_14793), partial mRNA blastn 26166 331 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
17632933 17632933 PRJNA195897_P_NODE_4434_length_227_cov_1.438202_g4401_i0 PRJNA195897 4434 227 1.438202 3.26471854 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|673034947|ref|XM_008873213.1| 157072 g4401 i0 100 0.656387665198238 30 0 13 0 36 65 617 588 Aphanomyces invadans hypothetical protein mRNA blastn 149 56.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
18217684 18217684 PRJNA195897_P_NODE_4695_length_221_cov_2.116279_g4662_i0 PRJNA195897 4695 221 2.116279 4.67697659 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 139 1.46e-28   NTclustered gi|301121759|ref|XM_002908561.1| 403677 g4662 i0 78.341 3.14932126696833 217 45 98 2 4 219 651 436 Phytophthora infestans T30-4 succinyl-CoA ligase subunit alpha, mitochondrial precursor (PITG_02026), partial mRNA blastn 696 139 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
19491948 19491948 PRJNA195897_P_NODE_1656_length_403_cov_3.692090_g1623_i0 PRJNA195897 1656 403 3.69209 14.8791227 Pythium torulosum 4799 SAR_Eukaryotes SAR_Eukaryotes 108 8.13e-19   NTclustered gi|1780534029|gb|MK753000.1| 4799 g1623 i0 94.286 15.833746898263 70 4 17 0 334 403 1304 1235 Pythium torulosum isolate MISO_8-29.1 beta-tubulin mRNA, complete cds blastn 6381 108 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium torulosum
20767474 20767474 PRJNA195897_P_NODE_11317_length_164_cov_1.113043_g11284_i0 PRJNA195897 11317 164 1.113043 1.82539052 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 111 2.23e-20   NTclustered gi|2794909533|ref|XM_067890873.1| 164328 g11284 i0 88.172 14.8475609756098 93 11 57 0 72 164 238 330 Phytophthora ramorum Proteasome subunit beta type-7 (KRP23_5767), partial mRNA blastn 2435 111 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
20767522 20767522 PRJNA195897_P_NODE_3897_length_244_cov_1.066667_g3864_i0 PRJNA195897 3897 244 1.066667 2.60266748 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 111 3.58e-20   NTclustered gi|695437469|ref|XM_009533931.1| 67593 g3864 i0 87 0.774590163934426 100 11 41 2 122 220 916 818 Phytophthora sojae hypothetical protein mRNA blastn 189 111 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
22732061 22732061 PRJNA195897_P_NODE_3618_length_254_cov_1.590244_g3585_i0 PRJNA195897 3618 254 1.590244 4.03921976 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 99 2.92e-16   NTclustered gi|66270188|gb|AY961478.1| 4787 g3585 i0 78.125 2.23622047244094 160 31 62 4 90 247 162 5 Phytophthora infestans clone MY-09-A-12 ribosomal protein L39 mRNA, complete cds blastn 568 99 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
23318073 23318073 PRJNA195897_P_NODE_2179_length_344_cov_1.094915_g2146_i0 PRJNA195897 2179 344 1.094915 3.7665076 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 285 2.95e-72   NTclustered gi|695388586|ref|XM_009520922.1| 67593 g2146 i0 89.083 375.96511627907 229 25 70 0 109 337 275 47 Phytophthora sojae hypothetical protein mRNA blastn 129332 285 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
24592176 24592176 PRJNA195897_P_NODE_1040_length_522_cov_1.794926_g1009_i0 PRJNA195897 1040 522 1.794926 9.36951372 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 87.9 1.4e-12   NTclustered gi|1378169911|ref|XM_024719330.1| 4781 g1009 i0 96.226 1.58045977011494 53 2 11 0 235 287 260 312 Plasmopara halstedii uncharacterized protein (PHALS_06101), partial mRNA blastn 825 87.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;