RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA195897" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA195897 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2916645 2916645 PRJNA195897_P_NODE_263_length_1000_cov_2.234490_g244_i0 PRJNA195897 263 1000 2.23449 22.3449 Polychytrium aggregatum 110093 Fungi Fungi 503 2.33e-137   NTclustered gi|2432130198|ref|XM_053115874.1| 110093 g244 i0 76.856 85.841 916 196 91 14 3 910 1148 241 Polychytrium aggregatum P-loop containing nucleoside triphosphate hydrolase protein (BJ171DRAFT_7386), mRNA blastn 85841 503 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
4193035 4193035 PRJNA195897_P_NODE_11184_length_165_cov_0.879310_g11151_i0 PRJNA195897 11184 165 0.87931 1.4508615 Fimicolochytrium jonesii 1396493 Fungi Fungi 56.5 0.001   NTclustered gi|2432078369|ref|XM_053074308.1| 1396493 g11151 i0 90.476 0.806060606060606 42 4 25 0 1 42 79 38 Fimicolochytrium jonesii uncharacterized protein (EV422DRAFT_68862), mRNA blastn 133 56.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
8019359 8019359 PRJNA195897_P_NODE_3787_length_247_cov_3.121212_g3754_i0 PRJNA195897 3787 247 3.121212 7.70939364 Polychytrium aggregatum 110093 Fungi Fungi 246 9.54e-61   NTclustered gi|2432143306|ref|XM_053110608.1| 110093 g3754 i0 88.614 30.331983805668 202 23 82 0 10 211 326 125 Polychytrium aggregatum putative 40S ribosomal protein RPS14 (BJ171DRAFT_500769), mRNA blastn 7492 246 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
16943259 16943259 PRJNA195897_P_NODE_3114_length_278_cov_1.646288_g3081_i0 PRJNA195897 3114 278 1.646288 4.57668064 Fimicolochytrium jonesii 1396493 Fungi Fungi 152 2.45e-32   NTclustered gi|2432058563|ref|XM_053065718.1| 1396493 g3081 i0 83.436 1.61151079136691 163 27 59 0 62 224 92 254 Fimicolochytrium jonesii 40S ribosomal protein S28 (EV422DRAFT_248144), mRNA blastn 448 152 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
16943318 16943318 PRJNA195897_P_NODE_9834_length_167_cov_1.322034_g9801_i0 PRJNA195897 9834 167 1.322034 2.20779678 Polychytrium aggregatum 110093 Fungi Fungi 141 2.91e-29   NTclustered gi|2432143906|ref|XM_053110665.1| 110093 g9801 i0 86.364 27.1017964071856 132 14 78 4 2 131 169 40 Polychytrium aggregatum cyclophilin-like domain-containing protein (BJ171DRAFT_501438), mRNA blastn 4526 141 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
19491944 19491944 PRJNA195897_P_NODE_1336_length_459_cov_1.429268_g1303_i0 PRJNA195897 1336 459 1.429268 6.56034012 Polychytrium aggregatum 110093 Fungi Fungi 224 8.919999999999998e-54   NTclustered gi|2432131389|ref|XM_053109302.1| 110093 g1303 i0 78.512 0.790849673202614 363 63 78 10 88 444 136 489 Polychytrium aggregatum ribosomal protein S3Ae (BJ171DRAFT_487525), mRNA blastn 363 224 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
19492007 19492007 PRJNA195897_P_NODE_616_length_690_cov_8.065523_g586_i0 PRJNA195897 616 690 8.065523 55.6521087 Polychytrium aggregatum 110093 Fungi Fungi 195 1.0800000000000001e-44   NTclustered gi|2432162630|ref|XM_053112000.1| 110093 g586 i0 76.238 20.1782608695652 404 74 57 16 77 472 134 523 Polychytrium aggregatum ribosomal protein L22/L17 (BJ171DRAFT_515986), mRNA blastn 13923 195 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
20767503 20767503 PRJNA195897_P_NODE_2617_length_308_cov_7.324324_g2584_i0 PRJNA195897 2617 308 7.324324 22.55891792 Polychytrium aggregatum 110093 Fungi Fungi 121 7.769999999999999e-23   NTclustered gi|2432138713|ref|XM_053107478.1| 110093 g2584 i0 84.252 6.97077922077922 127 16 41 3 13 137 24 148 Polychytrium aggregatum large subunit ribosomal protein 29 (BJ171DRAFT_421272), partial mRNA blastn 2147 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
24007269 24007269 PRJNA195897_P_NODE_12539_length_162_cov_0.920354_g12506_i0 PRJNA195897 12539 162 0.920354 1.49097348 Fungi 4751 Fungi Fungi 191 2.74e-44   NTclustered gi|2432130120|ref|XM_053107963.1| 110093 g12506 i0 88.535 21.3024691358025 157 18 97 0 6 162 987 831 Polychytrium aggregatum P-loop containing nucleoside triphosphate hydrolase protein (BJ171DRAFT_436912), mRNA blastn 3451 191 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
24592173 24592173 PRJNA195897_P_NODE_10080_length_167_cov_0.881356_g10047_i0 PRJNA195897 10080 167 0.881356 1.47186452 Polychytrium aggregatum 110093 Fungi Fungi 152 1.3399999999999998e-32   NTclustered gi|2432153160|ref|XM_053111407.1| 110093 g10047 i0 83.133 24.5508982035928 166 28 99 0 2 167 413 248 Polychytrium aggregatum protein RPL-30, isoform a (BJ171DRAFT_509631), mRNA blastn 4100 152 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
24592238 24592238 PRJNA195897_P_NODE_5720_length_203_cov_2.025974_g5687_i0 PRJNA195897 5720 203 2.025974 4.11272722 Batrachochytrium dendrobatidis 109871 Fungi Fungi 76.8 1.05e-9   NTclustered gi|575479223|ref|XM_006678843.1| 684364 g5687 i0 84.81 0.827586206896552 79 9 38 3 20 97 113 189 Batrachochytrium dendrobatidis JAM81 uncharacterized protein (BATDEDRAFT_19546), mRNA blastn 168 76.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;