RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA195897" and tax_phylum = "Chlorophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA195897 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1055327 1055327 PRJNA195897_P_NODE_3281_length_270_cov_1.276018_g3248_i0 PRJNA195897 3281 270 1.276018 3.4452486 Eukaryota 2759 Plants Plants 147 1.1000000000000001e-30   NTclustered gi|552823017|ref|XM_005846187.1| 554065 g3248 i0 79.71 11.6481481481481 207 39 76 3 8 213 2153 1949 Chlorella variabilis hypothetical protein (CHLNCDRAFT_36029) mRNA, complete cds blastn 3145 147 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
1640714 1640714 PRJNA195897_P_NODE_10022_length_167_cov_0.881356_g9989_i0 PRJNA195897 10022 167 0.881356 1.47186452 Micromonas commoda 296587 Plants Plants 187 3.68e-43   NTclustered gi|255081109|ref|XM_002504075.1| 296587 g9989 i0 88.961 31.6826347305389 154 13 91 4 9 160 152 1 Micromonas commoda predicted protein partial mRNA blastn 5291 187 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
1640805 1640805 PRJNA195897_P_NODE_9622_length_168_cov_0.873950_g9589_i0 PRJNA195897 9622 168 0.87395 1.468236 Pyramimonas sp. HV-2008 498058 Plants Plants 121 3.8099999999999996e-23   NTclustered gi|166236044|gb|EU375499.1| 498058 g9589 i0 80.357 1.98214285714286 168 25 99 8 1 167 686 846 Pyramimonas sp. HV-2008 28S ribosomal RNA gene, partial sequence blastn 333 121 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Pyramimonas Pyramimonas sp. HV-2008
9294105 9294105 PRJNA195897_P_NODE_868_length_575_cov_2.296578_g838_i0 PRJNA195897 868 575 2.296578 13.2053235 Micromonas commoda 296587 Plants Plants 438 3.7299999999999996e-118   NTclustered gi|255088288|ref|XM_002506021.1| 296587 g838 i0 81.579 91.8660869565217 532 96 92 2 1 531 376 906 Micromonas commoda alpha tubulin 1 (TUA1), mRNA blastn 52823 438 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
11844539 11844539 PRJNA195897_P_NODE_4130_length_235_cov_1.741935_g4097_i0 PRJNA195897 4130 235 1.741935 4.09354725 Mantoniella tinhauana 3097027 Plants Plants 84.2 7.47e-12   NTclustered gi|2735153282|gb|CP140067.1| 3097027 g4097 i0 91.667 3.08510638297872 60 5 26 0 2 61 820518 820577 Mantoniella tinhauana isolate LFS chromosome 6 blastn 725 84.2 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
15668810 15668810 PRJNA195897_P_NODE_6473_length_194_cov_1.075862_g6440_i0 PRJNA195897 6473 194 1.075862 2.08717228 Chlamydomonas incerta 51695 Plants Plants 126 9.73e-25   NTclustered gi|74272616|gb|DQ122873.1| 51695 g6440 i0 82.237 26.8814432989691 152 21 77 6 24 172 390 242 Chlamydomonas incerta mitochondrial alternative oxidase (AOX1) mRNA, partial cds; nuclear gene for mitochondrial product blastn 5215 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
15668830 15668830 PRJNA195897_P_NODE_8913_length_169_cov_1.300000_g8880_i0 PRJNA195897 8913 169 1.3 2.197 Micromonas commoda 296587 Plants Plants 54.7 0.004   NTclustered gi|255089317|ref|XM_002506535.1| 296587 g8880 i0 100 0.171597633136095 29 0 17 0 43 71 366 338 Micromonas commoda histone H2A partial mRNA blastn 29 54.7 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
16357710 16357710 PRJNA195897_P_NODE_2753_length_298_cov_9.421687_g2720_i0 PRJNA195897 2753 298 9.421687 28.07662726 Opisthokonta 33154 Plants Plants 99 3.51e-16   NTclustered gi|612395756|ref|XM_007513336.1| 41875 g2720 i0 80.303 1.84228187919463 132 24 44 2 96 226 171 41 Bathycoccus prasinos 40S ribosomal protein S29 (Bathy04g01450), partial mRNA blastn 549 100 0.99 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
19492012 19492012 PRJNA195897_P_NODE_7056_length_187_cov_1.507246_g7023_i0 PRJNA195897 7056 187 1.507246 2.81855002 Coccomyxa subellipsoidea 248742 Plants Plants 119 1.56e-22   NTclustered gi|545360680|ref|XM_005645643.1| 574566 g7023 i0 91.765 17.8502673796791 85 7 45 0 1 85 728 812 Coccomyxa subellipsoidea C-169 14-3-3 protein mRNA blastn 3338 119 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
20767558 20767558 PRJNA195897_P_NODE_8777_length_170_cov_1.289256_g8744_i0 PRJNA195897 8777 170 1.289256 2.1917352 Bathycoccus prasinos 41875 Plants Plants 128 2.3e-25   NTclustered gi|612392286|ref|XM_007511602.1| 41875 g8744 i0 86.325 0.688235294117647 117 16 69 0 7 123 120 236 Bathycoccus prasinos 40S ribosomal protein S17 (Bathy08g04660), partial mRNA blastn 117 128 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
23318082 23318082 PRJNA195897_P_NODE_2859_length_292_cov_1.423868_g2826_i0 PRJNA195897 2859 292 1.423868 4.15769456 Volvox carteri 3067 Plants Plants 126 1.57e-24   NTclustered gi|302851385|ref|XM_002957171.1| 3068 g2826 i0 91.304 3.69178082191781 92 8 32 0 165 256 590 499 Volvox carteri f. nagariensis alpha tubulin (tubA1), mRNA blastn 1078 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
24007291 24007291 PRJNA195897_P_NODE_9519_length_168_cov_0.873950_g9486_i0 PRJNA195897 9519 168 0.87395 1.468236 Eukaryota 2759 Plants Plants 300 4.56e-77   NTclustered gi|1201359271|gb|MF040793.1| 3078 g9486 i0 98.81 61.6428571428571 168 2 100 0 1 168 564 731 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 10356 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;