RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA195897" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA195897 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2916677 2916677 PRJNA195897_P_NODE_5103_length_214_cov_0.945455_g5070_i0 PRJNA195897 5103 214 0.945455 2.0232737 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 130 8.47e-26   NTclustered gi|2874253959|emb|OY970284.1| 2651171 g5070 i0 77.88 12.3224299065421 217 42 100 6 1 214 3500221 3500008 MAG: Thermoanaerobaculia bacterium isolate MFD05513.bin.1.42 genome assembly, chromosome: 1 blastn 2637 130 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
10570076 10570076 PRJNA195897_P_NODE_5889_length_201_cov_1.657895_g5856_i0 PRJNA195897 5889 201 1.657895 3.33236895 Geothrix sp. 21YS21S-2 3068893 Bacteria Bacteria 52.8 0.017   NTclustered gi|2566094019|gb|CP132910.1| 3068893 g5856 i0 100 0.278606965174129 28 0 14 0 117 144 3145741 3145768 Geothrix sp. 21YS21S-2 chromosome, complete genome blastn 56 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;