RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA195897" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA195897 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1055326 1055326 PRJNA195897_P_NODE_3001_length_284_cov_1.548936_g2968_i0 PRJNA195897 3001 284 1.548936 4.39897824 Deinococcus 1298 Bacteria Bacteria 520 5.98e-143   NTclustered gi|3093386|emb|AJ000002.1| 68909 g2968 i0 99.648 107.880281690141 284 1 100 0 1 284 304 21 Deinococcus geothermalis 16S rRNA gene, strain E50053 blastn 30638 520 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
3605769 3605769 PRJNA195897_P_NODE_5723_length_203_cov_1.837662_g5690_i0 PRJNA195897 5723 203 1.837662 3.73045386 Deinococcus 1298 Bacteria Bacteria 364 2e-96   NTclustered gi|470478007|ref|NR_076423.1| 68909 g5690 i0 99.015 251.251231527094 203 2 100 0 1 203 1513 1311 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 51004 364 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
4883277 4883277 PRJNA195897_P_NODE_5864_length_202_cov_1.013072_g5831_i0 PRJNA195897 5864 202 1.013072 2.04640544 Deinococcus 1298 Bacteria Bacteria 374 3.3e-99   NTclustered gi|470478007|ref|NR_076423.1| 68909 g5831 i0 100 336.133663366337 202 0 100 0 1 202 2451 2250 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 67899 374 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;