RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA195897" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 23 ✖

bioproject 1

  • PRJNA195897 · 23 ✖

analysis 1

  • blastn · 23 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
365941 365941 PRJNA195897_P_NODE_1201_length_486_cov_1.432494_g1170_i0 PRJNA195897 1201 486 1.432494 6.96192084 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 71.3 1.31e-7   NTclustered gi|470394136|ref|XM_004334911.1| 1257118 g1170 i0 100 7.1440329218107 38 0 8 0 354 391 1687 1724 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_096160), partial mRNA blastn 3472 71.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2330591 2330591 PRJNA195897_P_NODE_7242_length_185_cov_1.529412_g7209_i0 PRJNA195897 7242 185 1.529412 2.8294122 Entamoeba 5758 Evosea other_Eukaryota 143 9.11e-30   NTclustered gi|511087040|dbj|AK420788.1| 5759 g7209 i0 86.719 38.9405405405405 128 17 69 0 58 185 431 304 Entamoeba histolytica cDNA clone: Xeh-010F17, histone H3, putative, complete cds, strain: HM-1:IMSS blastn 7204 143 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
4193060 4193060 PRJNA195897_P_NODE_2324_length_331_cov_1.049645_g2291_i0 PRJNA195897 2324 331 1.049645 3.47432495 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 154 8.31e-33   NTclustered gi|470526295|ref|XM_004356679.1| 1257118 g2291 i0 86.014 31.9395770392749 143 20 43 0 37 179 2210 2352 Acanthamoeba castellanii str. Neff vacuolar proton ATPase, putative (ACA1_175060), partial mRNA blastn 10572 154 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4193065 4193065 PRJNA195897_P_NODE_284_length_971_cov_1.940347_g264_i0 PRJNA195897 284 971 1.940347 18.84076937 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 558 4.75e-154   NTclustered gi|470439766|ref|XM_004339180.1| 1257118 g264 i0 77.351 12.0741503604531 989 194 100 23 1 971 1518 542 Acanthamoeba castellanii str. Neff Inositol3-phosphate synthase (ACA1_058810), partial mRNA blastn 11724 558 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4193076 4193076 PRJNA195897_P_NODE_4304_length_230_cov_1.580110_g4271_i0 PRJNA195897 4304 230 1.58011 3.634253 Acytostelium subglobosum 361139 Evosea other_Eukaryota 65.8 2.64e-6   NTclustered gi|831784599|ref|XM_012902064.1| 1410327 g4271 i0 97.368 1.23478260869565 38 1 17 0 51 88 1245 1208 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 284 65.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
5469311 5469311 PRJNA195897_P_NODE_2305_length_332_cov_1.363958_g2272_i0 PRJNA195897 2305 332 1.363958 4.52834056 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 147 1.39e-30   NTclustered gi|470439750|ref|XM_004339178.1| 1257118 g2272 i0 76.552 6.85542168674699 290 54 85 10 1 283 283 1 Acanthamoeba castellanii str. Neff GDPassociated inhibitor, putative (ACA1_058790), partial mRNA blastn 2276 147 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9294087 9294087 PRJNA195897_P_NODE_668_length_662_cov_3.920065_g638_i0 PRJNA195897 668 662 3.920065 25.9508303 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.005   NTclustered gi|470378920|ref|XM_004333477.1| 1257118 g638 i0 94.444 0.054380664652568 36 2 5 0 514 549 43 78 Acanthamoeba castellanii str. Neff Actobindin, putative (ACA1_256510), partial mRNA blastn 36 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13119775 13119775 PRJNA195897_P_NODE_491_length_764_cov_3.464336_g463_i0 PRJNA195897 491 764 3.464336 26.46752704 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 479 2.9699999999999986e-130   NTclustered gi|470484553|ref|XM_004344028.1| 1257118 g463 i0 80.507 39.2068062827225 631 117 82 5 1 628 723 96 Acanthamoeba castellanii str. Neff Sadenosyl-L-homocysteine hydrolase, putative (ACA1_054200), partial mRNA blastn 29954 479 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14395090 14395090 PRJNA195897_P_NODE_7832_length_179_cov_1.200000_g7799_i0 PRJNA195897 7832 179 1.2 2.148 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 65.8 1.95e-6   NTclustered gi|470437282|ref|XM_004338924.1| 1257118 g7799 i0 93.182 0.245810055865922 44 3 25 0 136 179 922 879 Acanthamoeba castellanii str. Neff adenine nucleotide translocator, putative (ACA1_128450), partial mRNA blastn 44 65.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14395105 14395105 PRJNA195897_P_NODE_9492_length_168_cov_0.873950_g9459_i0 PRJNA195897 9492 168 0.87395 1.468236 Rostrostelium ellipticum 361140 Evosea other_Eukaryota 100 4.97e-17   NTclustered gi|1057487844|gb|KX539482.1| 361140 g9459 i0 84.112 3.50595238095238 107 13 63 3 59 163 3139 3035 Rostrostelium ellipticum strain AE2 glutamate dehydrogenase 2 (glud2) gene, complete cds blastn 589 100 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Rostrostelium Rostrostelium ellipticum
15082832 15082832 PRJNA195897_P_NODE_2152_length_347_cov_1.755034_g2119_i0 PRJNA195897 2152 347 1.755034 6.08996798 Echinamoeba 136449 Tubulinea other_Eukaryota 641 1.5299999999999996e-179   NTclustered gi|165968562|gb|EU377602.1| 136450 g2119 i0 100 75.492795389049 347 0 100 0 1 347 363 17 Echinamoeba exundans strain CRIB40 18S ribosomal RNA gene, partial sequence blastn 26196 641 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
15668785 15668785 PRJNA195897_P_NODE_3893_length_244_cov_1.174359_g3860_i0 PRJNA195897 3893 244 1.174359 2.86543596 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 148 2.7299999999999997e-31   NTclustered gi|470525569|ref|XM_004356569.1| 1257118 g3860 i0 79.654 1.17622950819672 231 27 87 5 32 243 944 715 Acanthamoeba castellanii str. Neff mitochondrial phosphate transporter, putative (ACA1_173800), partial mRNA blastn 287 148 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15668840 15668840 PRJNA195897_P_NODE_973_length_541_cov_9.495935_g942_i0 PRJNA195897 973 541 9.495935 51.37300835 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 231 6.3599999999999985e-56   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g942 i0 80.464 55.5064695009242 302 59 56 0 141 442 121 422 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 30029 231 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16943239 16943239 PRJNA195897_P_NODE_1854_length_379_cov_1.621212_g1821_i0 PRJNA195897 1854 379 1.621212 6.14439348 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 137 9.69e-28   NTclustered gi|470428251|ref|XM_004338026.1| 1257118 g1821 i0 79.787 0.934036939313984 188 38 50 0 96 283 693 506 Acanthamoeba castellanii str. Neff TolAlike protein (ACA1_224400), partial mRNA blastn 354 137 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16943268 16943268 PRJNA195897_P_NODE_4054_length_238_cov_1.100529_g4021_i0 PRJNA195897 4054 238 1.100529 2.61925902 Vannella sp. 1973054 Discosea other_Eukaryota 361 3.1299999999999995e-95   NTclustered gi|2169663314|gb|OL989990.1| 1973054 g4021 i0 94.142 77.8739495798319 239 11 100 3 1 238 1798 1562 Vannella sp. isolate P147 small subunit ribosomal RNA gene, partial sequence blastn 18534 361 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp.
16943302 16943302 PRJNA195897_P_NODE_734_length_636_cov_1.427598_g704_i0 PRJNA195897 734 636 1.427598 9.07952328 Acytostelium subglobosum 361139 Evosea other_Eukaryota 204 1.6499999999999998e-47   NTclustered gi|831786008|ref|XM_012902515.1| 1410327 g704 i0 79 1.33647798742138 300 61 47 2 1 299 710 412 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 850 204 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
17632921 17632921 PRJNA195897_P_NODE_10554_length_166_cov_0.888889_g10521_i0 PRJNA195897 10554 166 0.888889 1.47555574 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 307 2.69e-79   NTclustered gi|2675812010|gb|PP339676.1| 5778 g10521 i0 100 100 166 0 100 0 1 166 145 310 Vermamoeba vermiformis isolate TFEW12 small subunit ribosomal RNA gene, partial sequence blastn 16600 307 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18217644 18217644 PRJNA195897_P_NODE_1335_length_459_cov_1.773171_g1302_i0 PRJNA195897 1335 459 1.773171 8.13885489 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 296 1.86e-75   NTclustered gi|470492456|ref|XM_004345964.1| 1257118 g1302 i0 81.039 47.4923747276688 385 61 83 11 76 454 137 515 Acanthamoeba castellanii str. Neff 26S protease regulatory subunit 6B family protein (ACA1_184160), partial mRNA blastn 21799 296 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19492005 19492005 PRJNA195897_P_NODE_6036_length_199_cov_1.933333_g6003_i0 PRJNA195897 6036 199 1.933333 3.84733267 Acytostelium subglobosum 361139 Evosea other_Eukaryota 143 9.96e-30   NTclustered gi|831769224|ref|XM_012897186.1| 1410327 g6003 i0 82.609 17.7437185929648 161 28 81 0 39 199 687 527 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 3531 143 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
19492016 19492016 PRJNA195897_P_NODE_7716_length_180_cov_1.190840_g7683_i0 PRJNA195897 7716 180 1.19084 2.143512 Parvamoeba rugata 1076758 Discosea other_Eukaryota 171 4.0399999999999996e-38   NTclustered gi|1914009762|gb|MT975637.1| 1076758 g7683 i0 97.03 53.8388888888889 101 3 56 0 80 180 436 536 Parvamoeba rugata clone 1 actin gene, partial cds blastn 9691 171 1 Eukaryota Amoebozoa   Discosea   Himatismenida   Parvamoeba Parvamoeba rugata
20767500 20767500 PRJNA195897_P_NODE_2377_length_327_cov_1.208633_g2344_i0 PRJNA195897 2377 327 1.208633 3.95222991 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 191 6.25e-44   NTclustered gi|470392349|ref|XM_004334716.1| 1257118 g2344 i0 78.165 1.37003058103976 316 57 95 11 6 315 265 574 Acanthamoeba castellanii str. Neff Non-specific lipid-transfer protein (ACA1_092850), partial mRNA blastn 448 191 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23318060 23318060 PRJNA195897_P_NODE_12439_length_162_cov_0.920354_g12406_i0 PRJNA195897 12439 162 0.920354 1.49097348 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 84.2 4.78e-12   NTclustered gi|148536468|gb|EF410004.1| 108607 g12406 i0 77.027 1.12962962962963 148 32 91 2 6 152 1638 1492 Mastigamoeba balamuthi chaperonin 60 (Cpn60) mRNA, complete cds blastn 183 84.2 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
23318074 23318074 PRJNA195897_P_NODE_2359_length_328_cov_1.537634_g2326_i0 PRJNA195897 2359 328 1.537634 5.04343952 Acytostelium subglobosum 361139 Evosea other_Eukaryota 217 1.03e-51   NTclustered gi|831758194|ref|XM_012893815.1| 1410327 g2326 i0 82.329 3.24085365853659 249 44 76 0 80 328 1077 829 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 1063 217 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;