RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA193544" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA193544 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1055257 1055257 PRJNA193544_S_NODE_2001_length_191_cov_24154.746914_g1986_i0 PRJNA193544 2001 191 24154.746914 46135.56660574 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 294 2.47e-75   NTclustered gi|736694|gb|L41136.1|SNSRG18SA 39377 g1986 i0 100 81.1832460732984 159 0 83 0 33 191 206 48 Stenostomum sp. 18S ribosomal RNA (18S rRNA) gene, partial blastn 15506 294 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum sp. (in: flatworms)
8019245 8019245 PRJNA193544_S_NODE_1467_length_215_cov_11.440860_g1452_i0 PRJNA193544 1467 215 11.44086 24.597849 Promesostoma cochleare 1311875 Platyhelminthes Platyhelminthes 243 1.05e-59   NTclustered gi|588313926|gb|KC869884.1| 1311875 g1452 i0 87.383 98.2046511627907 214 23 99 4 1 212 2517 2728 Promesostoma cochleare 28S ribosomal RNA gene, partial sequence blastn 21114 243 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Promesostomidae Promesostoma Promesostoma cochleare

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;