RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA193544" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA193544 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9983268 9983268 PRJNA193544_S_NODE_1188_length_234_cov_17209.073171_g1173_i0 PRJNA193544 1188 234 17209.073171 40269.23122014 Xyalidae 73923 Nematoda Nematoda 71.3 5.79e-8   NTclustered gi|2580829809|gb|OR589760.1| 320139 g1173 i0 92 21.1752136752137 50 4 21 0 185 234 475 426 Daptonema setosum voucher genotype B F6010_2 large subunit ribosomal RNA gene, partial sequence blastn 4955 71.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Monhysterida Xyalidae Daptonema Daptonema setosum
15668704 15668704 PRJNA193544_S_NODE_33_length_621_cov_16.096284_g25_i0 PRJNA193544 33 621 16.096284 99.95792364 Prestwoodia delicata 2952384 Nematoda Nematoda 91.6 1.31e-13   NTclustered gi|2252614797|gb|ON747297.1| 2952384 g25 i0 90.278 1.36070853462158 72 4 11 3 194 263 345 275 Prestwoodia delicata isolate TROdel324 large subunit ribosomal RNA gene, partial sequence blastn 845 91.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Crenosomatidae Prestwoodia Prestwoodia delicata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;