RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA193544" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA193544 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6743589 6743589 PRJNA193544_S_NODE_506_length_315_cov_14041.552448_g491_i0 PRJNA193544 506 315 14041.552448 44230.8902112 Phycomyces blakesleeanus 4837 Fungi Fungi 195 4.63e-45   NTclustered gi|82398466|gb|DQ273800.1| 4837 g491 i0 96.581 38.5269841269841 117 4 37 0 34 150 2296 2180 Phycomyces blakesleeanus isolate AFTOL-ID 184 28S ribosomal RNA gene, partial sequence blastn 12136 195 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Phycomycetaceae Phycomyces Phycomyces blakesleeanus
23318021 23318021 PRJNA193544_S_NODE_479_length_319_cov_13847.003448_g464_i0 PRJNA193544 479 319 13847.003448 44171.94099912 Phycomyces blakesleeanus 4837 Fungi Fungi 195 4.7e-45   NTclustered gi|82398466|gb|DQ273800.1| 4837 g464 i0 96.581 38.0564263322884 117 4 37 0 34 150 2296 2180 Phycomyces blakesleeanus isolate AFTOL-ID 184 28S ribosomal RNA gene, partial sequence blastn 12140 195 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Phycomycetaceae Phycomyces Phycomyces blakesleeanus
25281305 25281305 PRJNA193544_S_NODE_1360_length_221_cov_48.416667_g1345_i0 PRJNA193544 1360 221 48.416667 107.00083407 Glomeromycetes 214506 Fungi Fungi 156 1.45e-33   NTclustered gi|365176724|emb|FR750138.1| 60492 g1345 i0 95.833 43.4389140271493 96 4 43 0 126 221 1038 943 Racocetra fulgida 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene (partial), clone pMK022-7 blastn 9600 156 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Racocetra Racocetra fulgida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;