RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA193544" and tax_phylum = "Candidatus Campbelliibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Campbelliibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA193544 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10569991 10569991 PRJNA193544_S_NODE_789_length_273_cov_16427.938525_g774_i0 PRJNA193544 789 273 16427.938525 44848.27217325 Candidatus Campbellbacteria bacterium GW2011_OD1_34_28 1618633 Bacteria Bacteria 241 4.98e-59   NTclustered gi|837353685|gb|CP011215.1| 1618633 g774 i0 86.697 442.747252747253 218 27 80 2 6 223 5550 5335 MAG: Candidatus Campbellbacteria bacterium GW2011_OD1_34_28 chromosome, complete genome blastn 120870 241 1 Bacteria Bacteria candidate phyla   Candidatus Campbelliibacteriota         Candidatus Campbellbacteria bacterium GW2011_OD1_34_28
18217618 18217618 PRJNA193544_S_NODE_855_length_265_cov_2913.110169_g840_i0 PRJNA193544 855 265 2913.110169 7719.74194785 Candidatus Campbellbacteria bacterium 2026716 Bacteria Bacteria 211 3.78e-50   NTclustered gi|1958034697|gb|CP064977.1| 2026716 g840 i0 88.953 451.969811320755 172 17 64 2 91 260 447166 447337 MAG: Candidatus Campbellbacteria bacterium isolate EsbW_18-Q3-R4-48_MAXAC.283_fly_man chromosome, complete genome blastn 119772 211 1 Bacteria Bacteria candidate phyla   Candidatus Campbelliibacteriota         Candidatus Campbellbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;