RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA193544" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA193544 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13119685 13119685 PRJNA193544_S_NODE_3091_length_158_cov_9.449612_g3076_i0 PRJNA193544 3091 158 9.449612 14.93038696 Deinococcus actinosclerus 1768108 Bacteria Bacteria 292 7.07e-75   NTclustered gi|972944657|gb|CP013910.1| 1768108 g3076 i0 100 195.272151898734 158 0 100 0 1 158 73972 74129 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 30853 292 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
16943144 16943144 PRJNA193544_S_NODE_1714_length_203_cov_4.925287_g1699_i0 PRJNA193544 1714 203 4.925287 9.99833261 Deinococcus grandis 57498 Bacteria Bacteria 351 1.56e-92   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g1699 i0 98.03 295.177339901478 203 3 100 1 1 203 73509 73710 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 59921 351 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
20181300 20181300 PRJNA193544_S_NODE_3336_length_153_cov_7.048387_g3321_i0 PRJNA193544 3336 153 7.048387 10.78403211 Deinococcus 1298 Bacteria Bacteria 231 1.4999999999999997e-56   NTclustered gi|2264081587|gb|CP094462.1| 1299 g3321 i0 94.079 195.921568627451 152 9 99 0 1 152 1217381 1217230 Deinococcus radiodurans strain BRD125 chromosome 1, complete sequence blastn 29976 231 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
24007223 24007223 PRJNA193544_S_NODE_2959_length_161_cov_5.909091_g2944_i0 PRJNA193544 2959 161 5.909091 9.51363651 Deinococcus 1298 Bacteria Bacteria 298 1.56e-76   NTclustered gi|821341785|gb|CP011389.1| 1309411 g2944 i0 100 43.6708074534162 161 0 100 0 1 161 1636773 1636933 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 7031 298 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;