RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA193544" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA193544 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8707995 8707995 PRJNA193544_S_NODE_987_length_252_cov_7.905830_g972_i0 PRJNA193544 987 252 7.90583 19.9226916 Cetobacterium 180162 Bacteria Bacteria 353 5.59e-93   NTclustered gi|2865368125|gb|CP122294.1| 188913 g972 i0 93.644 471.988095238095 236 15 94 0 17 252 278896 278661 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 118941 353 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
13119693 13119693 PRJNA193544_S_NODE_491_length_318_cov_10.934256_g476_i0 PRJNA193544 491 318 10.934256 34.77093408 Cetobacterium somerae 188913 Bacteria Bacteria 553 6.699999999999998e-153   NTclustered gi|2865366169|gb|CP122292.1| 188913 g476 i0 98.113 520 318 5 100 1 1 318 420146 420462 Cetobacterium somerae strain MSU41 chromosome, complete genome blastn 165360 553 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
14394969 14394969 PRJNA193544_S_NODE_1992_length_192_cov_10.337423_g1977_i0 PRJNA193544 1992 192 10.337423 19.84785216 Cetobacterium somerae 188913 Bacteria Bacteria 340 3.15e-89   NTclustered gi|2850954511|gb|CP173065.1| 1319815 g1977 i0 98.953 498.994791666667 191 1 99 1 3 192 941264 941074 Cetobacterium somerae ATCC BAA-474 chromosome blastn 95807 340 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
16357673 16357673 PRJNA193544_S_NODE_413_length_334_cov_13.134426_g398_i0 PRJNA193544 413 334 13.134426 43.86898284 Cetobacterium 180162 Bacteria Bacteria 549 9.159999999999997e-152   NTclustered gi|2865368125|gb|CP122294.1| 188913 g398 i0 96.418 515.50299401197606 335 8 99 4 1 333 279269 278937 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 172178 549 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;