RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA193544" and tax_clade = "Pyramimonas subgenus I"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Pyramimonas subgenus I · 1 ✖

bioproject 1

  • PRJNA193544 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9293990 9293990 PRJNA193544_S_NODE_3228_length_155_cov_14.738095_g3213_i0 PRJNA193544 3228 155 14.738095 22.84404725 Pyramimonas olivacea 36892 Plants Plants 171 3.37e-38   NTclustered gi|5851735|dbj|AB017122.3| 36892 g3213 i0 86.624 101.858064516129 157 17 100 4 1 155 1254 1408 Pyramimonas olivacea gene for 18S rRNA, partial sequence blastn 15788 171 1 Eukaryota Pyramimonas subgenus I Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Pyramimonas Pyramimonas olivacea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;