RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA188516" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA188516 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
365786 365786 PRJNA188516_P_NODE_3321_length_186_cov_1.897810_g3271_i0 PRJNA188516 3321 186 1.89781 3.5299266 Lecane bulla 96446 Rotifera other_Eukaryota 339 1.0899999999999998e-88   NTclustered gi|61200802|gb|AY829083.1| 96446 g3271 i0 99.462 83.5752688172043 186 1 100 0 1 186 654 469 Lecane bulla 28S ribosomal RNA gene, partial sequence blastn 15545 339 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
10569891 10569891 PRJNA188516_P_NODE_4649_length_167_cov_0.881356_g4599_i0 PRJNA188516 4649 167 0.881356 1.47186452 Lepadella patella 231622 Rotifera other_Eukaryota 243 7.739999999999999e-60   NTclustered gi|83285192|gb|DQ297739.1| 231622 g4599 i0 92.899 1.01197604790419 169 9 100 3 1 167 355 522 Lepadella patella 28S ribosomal RNA gene, partial sequence blastn 169 243 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae Lepadella Lepadella patella
19491836 19491836 PRJNA188516_P_NODE_736_length_454_cov_10.600000_g686_i0 PRJNA188516 736 454 10.6 48.124 Proales similis 360698 Rotifera other_Eukaryota 455 2.87e-123   NTclustered gi|1859640894|gb|MN970216.1| 360698 g686 i0 85.393 69.3766519823789 445 57 97 7 12 451 12081 12522 Proales similis mitochondrion, complete genome blastn 31497 455 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;