RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA188516" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA188516 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9293890 9293890 PRJNA188516_P_NODE_3668_length_177_cov_0.960938_g3618_i0 PRJNA188516 3668 177 0.960938 1.70086026 Gemmata sp. SH-PL17 1630693 Bacteria Bacteria 294 2.25e-75   NTclustered gi|1015440974|gb|CP011271.1| 1630693 g3618 i0 96.61 33.4237288135593 177 6 100 0 1 177 560093 559917 Gemmata sp. SH-PL17, complete genome blastn 5916 294 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata sp. SH-PL17
11844357 11844357 PRJNA188516_P_NODE_2850_length_203_cov_1.012987_g2800_i0 PRJNA188516 2850 203 1.012987 2.05636361 Gemmata massiliana 1210884 Bacteria Bacteria 281 2.07e-71   NTclustered gi|1804905141|emb|LR593886.1| 1210884 g2800 i0 91.707 15.8472906403941 205 13 100 4 1 203 3633588 3633790 Gemmata massiliana isolate Soil9 genome assembly, chromosome: 1 blastn 3217 281 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata massiliana
23317943 23317943 PRJNA188516_P_NODE_5199_length_165_cov_0.896552_g5149_i0 PRJNA188516 5199 165 0.896552 1.4793108 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 122 1.0399999999999997e-23   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g5149 i0 98.551 2.67878787878788 69 1 42 0 1 69 1867730 1867662 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 442 122 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;