RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA188516" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA188516 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4192942 4192942 PRJNA188516_P_NODE_5824_length_163_cov_0.912281_g5774_i0 PRJNA188516 5824 163 0.912281 1.48701803 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 95.3 2.23e-15   NTclustered gi|695375632|ref|XM_009517294.1| 67593 g5774 i0 80.992 0.742331288343558 121 21 74 2 29 148 268 149 Phytophthora sojae hypothetical protein partial mRNA blastn 121 95.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
14394887 14394887 PRJNA188516_P_NODE_3372_length_185_cov_1.147059_g3322_i0 PRJNA188516 3372 185 1.147059 2.12205915 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 106 1.2e-18   NTclustered gi|2795059860|ref|XM_067943008.1| 4785 g3322 i0 78.571 5.53513513513514 168 31 90 4 10 176 211 374 Phytophthora cinnamomi 40S ribosomal protein S3a (IUM83_18029), partial mRNA blastn 1024 106 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
20767342 20767342 PRJNA188516_P_NODE_3857_length_172_cov_1.382114_g3807_i0 PRJNA188516 3857 172 1.382114 2.37723608 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 228 2.2299999999999997e-55   NTclustered gi|673047298|ref|XM_008879388.1| 157072 g3807 i0 91.515 2.44186046511628 165 14 96 0 1 165 183 19 Aphanomyces invadans 60S ribosomal protein L10 mRNA blastn 420 228 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
22042448 22042448 PRJNA188516_P_NODE_4558_length_167_cov_1.279661_g4508_i0 PRJNA188516 4558 167 1.279661 2.13703387 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 180 6.16e-41   NTclustered gi|673042380|ref|XM_008876929.1| 157072 g4508 i0 86.875 3.46706586826347 160 21 96 0 1 160 249 408 Aphanomyces invadans 40S ribosomal protein partial mRNA blastn 579 180 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;