RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA188516" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA188516 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1640550 1640550 PRJNA188516_P_NODE_2402_length_222_cov_0.768786_g2352_i0 PRJNA188516 2402 222 0.768786 1.70670492 Strongyloides ratti 34506 Nematoda Nematoda 176 1.12e-39   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g2352 i0 83.784 92.2342342342342 185 30 83 0 37 221 1820 1636 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 20476 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
5469088 5469088 PRJNA188516_P_NODE_1485_length_298_cov_0.907631_g1435_i0 PRJNA188516 1485 298 0.907631 2.70474038 Halicephalobus gingivalis 114868 Nematoda Nematoda 248 3.2899999999999996e-61   NTclustered gi|564659230|gb|KF765478.1| 114868 g1435 i0 82.508 1.01677852348993 303 34 98 13 7 298 1256 1550 Halicephalobus gingivalis isolate Indigo S1342-13 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 303 248 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus gingivalis
9293924 9293924 PRJNA188516_P_NODE_5948_length_162_cov_0.920354_g5898_i0 PRJNA188516 5948 162 0.920354 1.49097348 Caenorhabditis briggsae 6238 Nematoda Nematoda 99 1.71e-16   NTclustered gi|268579136|ref|XM_002644505.1| 6238 g5898 i0 83.333 31.6049382716049 114 11 68 7 46 155 58 167 Caenorhabditis briggsae Protein CBR-PDI-2 (Cbr-pdi-2), partial mRNA blastn 5120 99 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
10569866 10569866 PRJNA188516_P_NODE_3229_length_189_cov_2.228571_g3179_i0 PRJNA188516 3229 189 2.228571 4.21199919 Caenorhabditis remanei 31234 Nematoda Nematoda 172 1.19e-38   NTclustered gi|2445369491|ref|XM_003103378.2| 31234 g3179 i0 83.246 32.3068783068783 191 28 100 4 1 189 212 24 Caenorhabditis remanei uncharacterized protein (GCK72_012055), partial mRNA blastn 6106 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;