RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA188516" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA188516 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6743482 6743482 PRJNA188516_P_NODE_3826_length_173_cov_1.258065_g3776_i0 PRJNA188516 3826 173 1.258065 2.17645245 Cokeromyces recurvatus 90255 Fungi Fungi 119 1.4100000000000001e-22   NTclustered gi|2324052953|ref|XM_051525900.1| 90255 g3776 i0 87.5 0.601156069364162 104 11 60 2 69 171 608 506 Cokeromyces recurvatus uncharacterized protein (BX663DRAFT_497341), partial mRNA blastn 104 119 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Cokeromyces Cokeromyces recurvatus
10569831 10569831 PRJNA188516_P_NODE_1549_length_290_cov_1.481328_g1499_i0 PRJNA188516 1549 290 1.481328 4.2958512 Rhizopus microsporus 58291 Fungi Fungi 217 9e-52   NTclustered gi|1331189772|ref|XM_023607192.1| 1340429 g1499 i0 84.977 19.8758620689655 213 32 73 0 1 213 209 421 Rhizopus microsporus ATCC 52813 uncharacterized protein (RHIMIDRAFT_211203), mRNA blastn 5764 217 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus microsporus
14394906 14394906 PRJNA188516_P_NODE_4592_length_167_cov_0.881356_g4542_i0 PRJNA188516 4592 167 0.881356 1.47186452 Radiomyces spectabilis 64574 Fungi Fungi 169 1.33e-37   NTclustered gi|2323733830|ref|XM_051572657.1| 64574 g4542 i0 85.119 6.35329341317365 168 21 99 4 1 166 313 148 Radiomyces spectabilis ribosomal S17-domain-containing protein (BYT42DRAFT_645550), partial mRNA blastn 1061 169 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Radiomycetaceae Radiomyces Radiomyces spectabilis
19491829 19491829 PRJNA188516_P_NODE_5856_length_163_cov_0.912281_g5806_i0 PRJNA188516 5856 163 0.912281 1.48701803 Rhizophagus irregularis 588596 Fungi Fungi 82.4 1.73e-11   NTclustered gi|2749812207|ref|XM_025310519.2| 588596 g5806 i0 80.769 0.895705521472393 104 20 64 0 60 163 627 730 Rhizophagus irregularis uncharacterized protein (OCT59_013130), partial mRNA blastn 146 82.4 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Glomerales Glomeraceae Rhizophagus Rhizophagus irregularis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;