RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA188516" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA188516 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5469136 5469136 PRJNA188516_P_NODE_3305_length_187_cov_1.311594_g3255_i0 PRJNA188516 3305 187 1.311594 2.45268078 Stemonaria longa 1258717 Evosea other_Eukaryota 152 1.5299999999999998e-32   NTclustered gi|2714663874|gb|OR759949.1| 1258717 g3255 i0 89.256 68.0106951871658 121 13 65 0 67 187 589 469 Stemonaria longa translation elongation factor EF-1 subunit alpha (EF1A) gene, partial cds blastn 12718 152 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonaria Stemonaria longa
10569906 10569906 PRJNA188516_P_NODE_5389_length_164_cov_0.904348_g5339_i0 PRJNA188516 5389 164 0.904348 1.48313072 Arcyria cinerea 137621 Evosea other_Eukaryota 198 1.66e-46   NTclustered gi|2772191589|gb|PQ014972.1| 137621 g5339 i0 91.608 68 143 12 87 0 15 157 126 268 Arcyria cinerea voucher sc32852 translation elongation factor 1-alpha (EF1a) gene, partial cds blastn 11152 198 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria cinerea
15668576 15668576 PRJNA188516_P_NODE_2373_length_223_cov_1.086207_g2323_i0 PRJNA188516 2373 223 1.086207 2.42224161 Acytostelium subglobosum 361139 Evosea other_Eukaryota 99 2.51e-16   NTclustered gi|831770523|ref|XM_012897573.1| 1410327 g2323 i0 88.889 1.00896860986547 81 7 36 2 43 122 431 352 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 225 99 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
22042467 22042467 PRJNA188516_P_NODE_5798_length_163_cov_0.912281_g5748_i0 PRJNA188516 5798 163 0.912281 1.48701803 Acytostelium subglobosum 361139 Evosea other_Eukaryota 147 6.0599999999999996e-31   NTclustered gi|831760979|ref|XM_012894664.1| 1410327 g5748 i0 84.106 37.8036809815951 151 24 93 0 1 151 195 345 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 6162 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;