RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA188516" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA188516 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9293849 9293849 PRJNA188516_P_NODE_1668_length_276_cov_0.938326_g1618_i0 PRJNA188516 1668 276 0.938326 2.58977976 Paramoeba branchiphila 308475 Discosea other_Eukaryota 313 1.05e-80   NTclustered gi|226347442|gb|FJ807261.1| 308475 g1618 i0 87.319 100.79347826087 276 31 99 4 1 274 738 1011 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 27819 313 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
10569871 10569871 PRJNA188516_P_NODE_3689_length_176_cov_1.228346_g3639_i0 PRJNA188516 3689 176 1.228346 2.16188896 Thecamoeba sp. JRG-2011 1078868 Discosea other_Eukaryota 248 1.7599999999999998e-61   NTclustered gi|345452609|gb|JF694323.1| 1078868 g3639 i0 92.045 98.4772727272727 176 14 100 0 1 176 161 336 Thecamoeba sp. JRG-2011 strain ATCC 50185 clone 1 actin gene, partial cds blastn 17332 248 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba sp. JRG-2011

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;