RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA188516" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA188516 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6743501 6743501 PRJNA188516_P_NODE_5006_length_166_cov_0.888889_g4956_i0 PRJNA188516 5006 166 0.888889 1.47555574 Deinococcus geothermalis 68909 Bacteria Bacteria 307 2.69e-79   NTclustered gi|94554390|gb|CP000359.1| 319795 g4956 i0 100 1 166 0 100 0 1 166 2266409 2266244 Deinococcus geothermalis DSM 11300, complete genome blastn 166 307 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
15668617 15668617 PRJNA188516_P_NODE_4773_length_166_cov_2.666667_g4723_i0 PRJNA188516 4773 166 2.666667 4.42666722 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 287 3.5e-73   NTclustered gi|821341785|gb|CP011389.1| 1309411 g4723 i0 97.633 198.048192771084 169 1 100 1 1 166 1638727 1638895 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 32876 287 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
16943055 16943055 PRJNA188516_P_NODE_2894_length_201_cov_1.368421_g2844_i0 PRJNA188516 2894 201 1.368421 2.75052621 Deinococcus geothermalis 68909 Bacteria Bacteria 372 1.18e-98   NTclustered gi|94554390|gb|CP000359.1| 319795 g2844 i0 100 11.2039800995025 201 0 100 0 1 201 2118986 2119186 Deinococcus geothermalis DSM 11300, complete genome blastn 2252 372 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
18217477 18217477 PRJNA188516_P_NODE_2075_length_240_cov_1.565445_g2025_i0 PRJNA188516 2075 240 1.565445 3.757068 Deinococcus sp. NW-56 2080419 Bacteria Bacteria 433 6.599999999999997e-117   NTclustered gi|1339790003|gb|CP026516.1| 2080419 g2025 i0 99.167 255.166666666667 240 2 100 0 1 240 2417693 2417454 Deinococcus sp. NW-56 chromosome, complete genome blastn 61240 433 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. NW-56
18217526 18217526 PRJNA188516_P_NODE_5015_length_166_cov_0.888889_g4965_i0 PRJNA188516 5015 166 0.888889 1.47555574 Deinococcus geothermalis 68909 Bacteria Bacteria 307 2.69e-79   NTclustered gi|94554390|gb|CP000359.1| 319795 g4965 i0 100 35.0240963855422 166 0 100 0 1 166 827834 827669 Deinococcus geothermalis DSM 11300, complete genome blastn 5814 307 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;