RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA177642" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA177642 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5468766 5468766 PRJNA177642_P_NODE_14205_length_218_cov_2.724868_g12980_i0 PRJNA177642 14205 218 2.724868 5.94021224 Charadrius vociferus 50402 Chordata Chordata 375 1.0099999999999998e-99   NTclustered gi|699667904|ref|XM_009885697.1| 50402 g12980 i0 97.706 35.848623853211 218 5 100 0 1 218 262 45 PREDICTED: Charadrius vociferus uncharacterized LOC104287046 (LOC104287046), partial mRNA blastn 7815 375 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
9293555 9293555 PRJNA177642_P_NODE_16668_length_170_cov_2.886525_g15443_i0 PRJNA177642 16668 170 2.886525 4.9070925 Gallus gallus 9031 Chordata Chordata 305 9.88e-79   NTclustered gi|2201664513|ref|XM_040653867.2| 9031 g15443 i0 99.405 12.5294117647059 168 1 99 0 2 169 275 108 PREDICTED: Gallus gallus zinc finger protein 501-like (LOC121107770), mRNA blastn 2130 305 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
11844045 11844045 PRJNA177642_P_NODE_16930_length_169_cov_1.128571_g15705_i0 PRJNA177642 16930 169 1.128571 1.90728499 Sus scrofa 9823 Chordata Chordata 219 1.3099999999999999e-52   NTclustered gi|165931778|emb|AM932505.1| 9823 g15705 i0 90 21.112426035503 170 15 100 2 1 169 62 230 Sus scrofa centromeric satellite repeat, clone Pg3 blastn 3568 219 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
11844058 11844058 PRJNA177642_P_NODE_17530_length_166_cov_1.810219_g16305_i0 PRJNA177642 17530 166 1.810219 3.00496354 Charadrius vociferus 50402 Chordata Chordata 265 1.64e-66   NTclustered gi|699695430|ref|XM_009891680.1| 50402 g16305 i0 95.758 6.8855421686747 165 6 99 1 1 164 998 1162 PREDICTED: Charadrius vociferus uncharacterized LOC104292323 (LOC104292323), partial mRNA blastn 1143 265 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
13119196 13119196 PRJNA177642_P_NODE_13011_length_283_cov_1.122047_g11786_i0 PRJNA177642 13011 283 1.122047 3.17539301 Charadrius vociferus 50402 Chordata Chordata 444 3.69e-120   NTclustered gi|699656164|ref|XM_009883139.1| 50402 g11786 i0 95.053 25.8268551236749 283 13 99 1 2 283 1806 2088 PREDICTED: Charadrius vociferus uncharacterized LOC104284769 (LOC104284769), mRNA blastn 7309 444 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
16357532 16357532 PRJNA177642_P_NODE_16973_length_169_cov_1.028571_g15748_i0 PRJNA177642 16973 169 1.028571 1.73828499 Bubalus 9918 Chordata Chordata 313 5.859999999999999e-81   NTclustered gi|1904695191|gb|MT942706.1| 89462 g15748 i0 100 100 169 0 100 0 1 169 13420 13588 Bubalus bubalis isolate H18 mitochondrion, complete genome blastn 16900 313 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bubalus Bubalus bubalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;