contig_metadata
20 rows where analysis = "blastn", bioproject = "PRJNA177642" and tax_phylum = "Bacteroidota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 365489 | 365489 | PRJNA177642_P_NODE_18141_length_164_cov_1.044444_g16916_i0 | PRJNA177642 | 18141 | 164 | 1.044444 | 1.71288816 | Elizabethkingia meningoseptica | 238 | Bacteria | Bacteria | 198 | 1.66e-46 | NTclustered | gi|1154260111|gb|CP014338.1| | 238 | g16916 | i0 | 88.485 | 19.6890243902439 | 165 | 18 | 100 | 1 | 1 | 164 | 2351668 | 2351832 | Elizabethkingia meningoseptica strain KC1913 chromosome, complete genome | blastn | 3229 | 198 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Elizabethkingia | Elizabethkingia meningoseptica | |
| 365644 | 365644 | PRJNA177642_P_NODE_6741_length_517_cov_2.006148_g5586_i0 | PRJNA177642 | 6741 | 517 | 2.006148 | 10.37178516 | Flavobacterium psychrophilum | 96345 | Bacteria | Bacteria | 250 | 1.67e-61 | NTclustered | gi|1057916935|gb|CP012388.1| | 96345 | g5586 | i0 | 75.422 | 324.261121856867 | 533 | 101 | 99 | 27 | 3 | 516 | 2973427 | 2972906 | Flavobacterium psychrophilum strain Z1, complete genome | blastn | 167643 | 250 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium psychrophilum | |
| 3605541 | 3605541 | PRJNA177642_P_NODE_14323_length_214_cov_2.567568_g13098_i0 | PRJNA177642 | 14323 | 214 | 2.567568 | 5.49459552 | Emticicia | 312278 | Bacteria | Bacteria | 324 | 3.62e-84 | NTclustered | gi|470489174|ref|NR_076911.1| | 312279 | g13098 | i0 | 94.366 | 313.093457943925 | 213 | 9 | 99 | 3 | 3 | 214 | 717 | 507 | Emticicia oligotrophica strain GPTSA100-15 23S ribosomal RNA gene, complete sequence | blastn | 67002 | 324 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Cytophagia | Cytophagales | Leadbetterellaceae | Emticicia | Emticicia oligotrophica | |
| 4192610 | 4192610 | PRJNA177642_P_NODE_17924_length_165_cov_1.036765_g16699_i0 | PRJNA177642 | 17924 | 165 | 1.036765 | 1.71066225 | Flavobacterium cyclinae | 2895947 | Bacteria | Bacteria | 243 | 7.63e-60 | NTclustered | gi|2164473264|gb|CP089095.1| | 2895947 | g16699 | i0 | 93.293 | 10.3151515151515 | 164 | 11 | 99 | 0 | 2 | 165 | 925331 | 925494 | Flavobacterium cyclinae strain KSM-R2A25 chromosome, complete genome | blastn | 1702 | 243 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium cyclinae | |
| 6157869 | 6157869 | PRJNA177642_P_NODE_18225_length_163_cov_2.119403_g17000_i0 | PRJNA177642 | 18225 | 163 | 2.119403 | 3.45462689 | Bacteroidota | 976 | Bacteria | Bacteria | 158 | 2.8e-34 | NTclustered | gi|2621717819|emb|OY776216.1| | 1618115 | g17000 | i0 | 88.462 | 319.239263803681 | 130 | 15 | 82 | 0 | 31 | 160 | 5528038 | 5528167 | MAG: uncultured Saccharicrinis sp. isolate 1ff51e6b-9ef2-4a18-b850-43072ca9d896 genome assembly, chromosome: 1 | blastn | 52036 | 158 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Marinilabiliales | Marinilabiliaceae | Saccharicrinis | uncultured Saccharicrinis sp. | |
| 8018885 | 8018885 | PRJNA177642_P_NODE_18567_length_162_cov_1.082707_g17342_i0 | PRJNA177642 | 18567 | 162 | 1.082707 | 1.75398534 | Candidatus Kaistella beijingensis | 2820270 | Bacteria | Bacteria | 289 | 9.44e-74 | NTclustered | gi|2097156165|gb|CP071953.1| | 2820270 | g17342 | i0 | 98.765 | 1 | 162 | 2 | 100 | 0 | 1 | 162 | 2763432 | 2763593 | Candidatus Kaistella beijingensis strain PM-38 chromosome, complete genome | blastn | 162 | 289 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Kaistella | Candidatus Kaistella beijingensis | |
| 8707833 | 8707833 | PRJNA177642_P_NODE_14687_length_204_cov_1.634286_g13462_i0 | PRJNA177642 | 14687 | 204 | 1.634286 | 3.33394344 | Emticicia | 312278 | Bacteria | Bacteria | 294 | 2.68e-75 | NTclustered | gi|470489174|ref|NR_076911.1| | 312279 | g13462 | i0 | 92.647 | 23.4754901960784 | 204 | 15 | 100 | 0 | 1 | 204 | 1304 | 1507 | Emticicia oligotrophica strain GPTSA100-15 23S ribosomal RNA gene, complete sequence | blastn | 4789 | 294 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Cytophagia | Cytophagales | Leadbetterellaceae | Emticicia | Emticicia oligotrophica | |
| 9293554 | 9293554 | PRJNA177642_P_NODE_16628_length_171_cov_1.014085_g15403_i0 | PRJNA177642 | 16628 | 171 | 1.014085 | 1.73408535 | Chryseobacterium scophthalmum | 59733 | Bacteria | Bacteria | 298 | 1.67e-76 | NTclustered | gi|2653363380|gb|CP142423.1| | 59733 | g15403 | i0 | 98.235 | 3.9766081871345 | 170 | 3 | 99 | 0 | 2 | 171 | 3128100 | 3127931 | Chryseobacterium scophthalmum strain JUb44 chromosome | blastn | 680 | 298 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Chryseobacterium | Chryseobacterium scophthalmum | |
| 9293571 | 9293571 | PRJNA177642_P_NODE_17448_length_167_cov_1.014493_g16223_i0 | PRJNA177642 | 17448 | 167 | 1.014493 | 1.69420331 | Sediminibacterium sp. TEGAF015 | 575378 | Bacteria | Bacteria | 305 | 9.74e-79 | NTclustered | gi|2285221741|dbj|AP026683.1| | 575378 | g16223 | i0 | 100 | 215.808383233533 | 165 | 0 | 99 | 0 | 2 | 166 | 55310 | 55474 | Sediminibacterium sp. TEGAF015 DNA, complete genome | blastn | 36040 | 305 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Chitinophagia | Chitinophagales | Chitinophagaceae | Sediminibacterium | Sediminibacterium sp. TEGAF015 | |
| 10569560 | 10569560 | PRJNA177642_P_NODE_17689_length_166_cov_1.021898_g16464_i0 | PRJNA177642 | 17689 | 166 | 1.021898 | 1.6963506800000001 | Bacteroides ovatus | 28116 | Bacteria | Bacteria | 302 | 1.2500000000000001e-77 | NTclustered | gi|2032952970|gb|CP072244.1| | 28116 | g16464 | i0 | 99.398 | 8.00602409638554 | 166 | 1 | 100 | 0 | 1 | 166 | 1632920 | 1633085 | Bacteroides ovatus strain CL06T03C20 chromosome, complete genome | blastn | 1329 | 302 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Bacteroidaceae | Bacteroides | Bacteroides ovatus | |
| 11844020 | 11844020 | PRJNA177642_P_NODE_15310_length_190_cov_1.658385_g14085_i0 | PRJNA177642 | 15310 | 190 | 1.658385 | 3.1509315 | Bacteroides uniformis | 820 | Bacteria | Bacteria | 350 | 5.169999999999999e-92 | NTclustered | gi|2884834938|gb|CP176641.1| | 820 | g14085 | i0 | 100 | 2.98421052631579 | 189 | 0 | 99 | 0 | 2 | 190 | 2118809 | 2118621 | Bacteroides uniformis strain SFAD16 chromosome, complete genome | blastn | 567 | 350 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Bacteroidaceae | Bacteroides | Bacteroides uniformis | |
| 12533785 | 12533785 | PRJNA177642_P_NODE_19010_length_154_cov_3.312000_g17785_i0 | PRJNA177642 | 19010 | 154 | 3.312 | 5.10048 | Bacteroidales | 171549 | Bacteria | Bacteria | 285 | 1.14e-72 | NTclustered | gi|2290582439|gb|CP103096.1| | 817 | g17785 | i0 | 100 | 68.448051948052 | 154 | 0 | 100 | 0 | 1 | 154 | 3445101 | 3444948 | Bacteroides fragilis strain BFG-634 chromosome | blastn | 10541 | 285 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Bacteroidaceae | Bacteroides | Bacteroides fragilis | |
| 14394566 | 14394566 | PRJNA177642_P_NODE_15432_length_187_cov_1.873418_g14207_i0 | PRJNA177642 | 15432 | 187 | 1.873418 | 3.50329166 | Emticicia sp. 21SJ11W-3 | 2916755 | Bacteria | Bacteria | 244 | 2.4599999999999999e-60 | NTclustered | gi|2264098040|gb|CP092074.1| | 2916755 | g14207 | i0 | 90.374 | 424.438502673797 | 187 | 16 | 100 | 2 | 1 | 187 | 112752 | 112568 | Emticicia sp. 21SJ11W-3 chromosome, complete genome | blastn | 79370 | 244 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Cytophagia | Cytophagales | Leadbetterellaceae | Emticicia | Emticicia sp. 21SJ11W-3 | |
| 15668313 | 15668313 | PRJNA177642_P_NODE_16533_length_171_cov_2.028169_g15308_i0 | PRJNA177642 | 16533 | 171 | 2.028169 | 3.46816899 | Tellurirhabdus rosea | 2674997 | Bacteria | Bacteria | 185 | 1.3499999999999997e-42 | NTclustered | gi|2336996033|gb|CP111085.1| | 2674997 | g15308 | i0 | 86.286 | 22.9122807017544 | 175 | 19 | 100 | 4 | 1 | 171 | 255728 | 255901 | Tellurirhabdus rosea strain U15T chromosome, complete genome | blastn | 3918 | 185 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Cytophagia | Cytophagales | Spirosomataceae | Tellurirhabdus | Tellurirhabdus rosea | |
| 15668331 | 15668331 | PRJNA177642_P_NODE_17593_length_166_cov_1.051095_g16368_i0 | PRJNA177642 | 17593 | 166 | 1.051095 | 1.7448177 | Spirosoma linguale | 108 | Bacteria | Bacteria | 213 | 6.03e-51 | NTclustered | gi|283814236|gb|CP001769.1| | 504472 | g16368 | i0 | 89.759 | 1.95180722891566 | 166 | 17 | 100 | 0 | 1 | 166 | 3627144 | 3627309 | Spirosoma linguale DSM 74, complete genome | blastn | 324 | 213 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Cytophagia | Cytophagales | Cytophagaceae | Spirosoma | Spirosoma linguale | |
| 20767020 | 20767020 | PRJNA177642_P_NODE_17117_length_168_cov_1.553957_g15892_i0 | PRJNA177642 | 17117 | 168 | 1.553957 | 2.61064776 | Hymenobacter nivis | 1850093 | Bacteria | Bacteria | 52.8 | 0.014 | NTclustered | gi|1391209682|gb|CP029145.1| | 1850093 | g15892 | i0 | 100 | 0.166666666666667 | 28 | 0 | 17 | 0 | 130 | 157 | 3947552 | 3947525 | Hymenobacter nivis strain NBRC 111535 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Cytophagia | Cytophagales | Hymenobacteraceae | Hymenobacter | Hymenobacter nivis | |
| 20767052 | 20767052 | PRJNA177642_P_NODE_18417_length_163_cov_1.037313_g17192_i0 | PRJNA177642 | 18417 | 163 | 1.037313 | 1.69082019 | Cloacibacterium caeni | 2004710 | Bacteria | Bacteria | 283 | 4.43e-72 | NTclustered | gi|2040340748|emb|OU015321.1| | 2004710 | g17192 | i0 | 98.148 | 4.14723926380368 | 162 | 3 | 99 | 0 | 2 | 163 | 2205685 | 2205846 | Cloacibacterium caeni isolate Isolate2 genome assembly, chromosome: 1 | blastn | 676 | 283 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Cloacibacterium | Cloacibacterium caeni | |
| 22042095 | 22042095 | PRJNA177642_P_NODE_16458_length_172_cov_1.006993_g15233_i0 | PRJNA177642 | 16458 | 172 | 1.006993 | 1.73202796 | Segatella copri | 165179 | Bacteria | Bacteria | 307 | 2.79e-79 | NTclustered | gi|2784148841|gb|CP156891.1| | 165179 | g15233 | i0 | 98.837 | 18.9825581395349 | 172 | 2 | 100 | 0 | 1 | 172 | 2988388 | 2988217 | Segatella copri strain HDC01 chromosome 1 | blastn | 3265 | 307 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Prevotellaceae | Segatella | Segatella copri | |
| 22042105 | 22042105 | PRJNA177642_P_NODE_16958_length_169_cov_1.028571_g15733_i0 | PRJNA177642 | 16958 | 169 | 1.028571 | 1.73828499 | Flavobacterium sp. Sr18 | 935222 | Bacteria | Bacteria | 104 | 3.84e-18 | NTclustered | gi|1818223938|gb|CP049329.1| | 935222 | g15733 | i0 | 79.73 | 3.55029585798817 | 148 | 26 | 86 | 4 | 16 | 161 | 2022240 | 2022385 | Flavobacterium sp. Sr18 chromosome, complete genome | blastn | 600 | 104 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium sp. Sr18 | |
| 22042117 | 22042117 | PRJNA177642_P_NODE_17638_length_166_cov_1.051095_g16413_i0 | PRJNA177642 | 17638 | 166 | 1.051095 | 1.7448177 | Capnocytophaga leadbetteri | 327575 | Bacteria | Bacteria | 285 | 1.26e-72 | NTclustered | gi|1242560045|gb|CP022384.1| | 327575 | g16413 | i0 | 97.59 | 4.39156626506024 | 166 | 4 | 100 | 0 | 1 | 166 | 2470440 | 2470275 | Capnocytophaga leadbetteri strain H6253 chromosome, complete genome | blastn | 729 | 285 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Capnocytophaga | Capnocytophaga leadbetteri |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;