RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA177642" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA177642 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
365458 365458 PRJNA177642_P_NODE_16641_length_171_cov_1.014085_g15416_i0 PRJNA177642 16641 171 1.014085 1.73408535 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 58.4 3.08e-4   NTclustered gi|916497612|ref|XM_013494182.1| 44415 g15416 i0 94.595 0.385964912280702 37 2 22 0 121 157 182 146 Eimeria mitis uncharacterized protein (EMH_0028660), partial mRNA blastn 66 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
19491459 19491459 PRJNA177642_P_NODE_16196_length_174_cov_1.703448_g14971_i0 PRJNA177642 16196 174 1.703448 2.96399952 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 195 2.3e-45   NTclustered gi|820695469|tpe|LN714488.1| 572307 g14971 i0 88.679 40.0402298850575 159 18 99 0 16 174 299232 299390 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 6967 195 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;