RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA177642" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA177642 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1640404 1640404 PRJNA177642_P_NODE_5962_length_572_cov_3.151013_g4854_i0 PRJNA177642 5962 572 3.151013 18.02379436 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 621 3.4299999999999994e-173   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g4854 i0 86.538 7.26748251748252 572 68 100 3 1 572 3216479 3215917 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 4157 621 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
8018757 8018757 PRJNA177642_P_NODE_11507_length_324_cov_1.294915_g10282_i0 PRJNA177642 11507 324 1.294915 4.1955246 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 78.7 5.02e-10   NTclustered gi|2874254106|emb|OY970189.1| 100233 g10282 i0 87.143 0.70679012345679 70 7 21 2 4 72 614763 614831 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 229 78.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
22042107 22042107 PRJNA177642_P_NODE_17018_length_169_cov_1.007143_g15793_i0 PRJNA177642 17018 169 1.007143 1.70207167 Frigoriglobus tundricola 2774151 Bacteria Bacteria 255 1e-63   NTclustered gi|1870286614|gb|CP053452.2| 2774151 g15793 i0 94.048 0.994082840236686 168 10 99 0 2 169 1332086 1331919 Frigoriglobus tundricola strain PL17 chromosome, complete genome blastn 168 255 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Frigoriglobus Frigoriglobus tundricola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;