RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA177642" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA177642 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15082637 15082637 PRJNA177642_P_NODE_14712_length_203_cov_3.212644_g13487_i0 PRJNA177642 14712 203 3.212644 6.52166732 Microcystis 1125 Bacteria Bacteria 366 5.56e-97   NTclustered gi|1566846205|dbj|LC455583.1| 1126 g13487 i0 99.505 119.743842364532 202 0 99 1 2 202 200 401 Microcystis aeruginosa NIES-3804 gene for 23S ribosomal RNA, partial sequence blastn 24308 366 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa
17632769 17632769 PRJNA177642_P_NODE_17734_length_165_cov_4.904412_g16509_i0 PRJNA177642 17734 165 4.904412 8.0922798 Microcystis 1125 Bacteria Bacteria 305 9.59e-79   NTclustered gi|119352232|gb|EF121241.1| 1126 g16509 i0 100 101 165 0 100 0 1 165 750 586 Microcystis aeruginosa strain SPC 777 16S ribosomal RNA gene, partial sequence blastn 16665 305 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa
17632792 17632792 PRJNA177642_P_NODE_6234_length_553_cov_3.555344_g5114_i0 PRJNA177642 6234 553 3.555344 19.66105232 Microcystis 1125 Bacteria Bacteria 1020 0   NTclustered gi|1566846220|dbj|LC455598.1| 1126 g5114 i0 100 151.969258589512 552 0 99 0 2 553 1652 1101 Microcystis aeruginosa NIES-3795 gene for 23S ribosomal RNA, partial sequence blastn 84039 1020 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;