RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA177642" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA177642 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2916385 2916385 PRJNA177642_P_NODE_9063_length_387_cov_2.321229_g7847_i0 PRJNA177642 9063 387 2.321229 8.98315623 Soliformovum irregulare 435424 Evosea other_Eukaryota 268 3.37e-67   NTclustered gi|146448863|gb|EF513199.1| 435424 g7847 i0 81.176 79.0180878552972 340 58 87 6 29 365 1076 740 Soliformovum irregulare elongation factor 1A (EF1A) gene, partial cds blastn 30580 268 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
15082639 15082639 PRJNA177642_P_NODE_14932_length_199_cov_1.264706_g13707_i0 PRJNA177642 14932 199 1.264706 2.51676494 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 171 4.57e-38   NTclustered gi|2329703126|gb|MW239924.1| 75757 g13707 i0 82.051 51.1557788944724 195 35 98 0 3 197 381 575 Didymium nigripes strain MA-Fungi 80617 alpha tubulin (aTUB) gene, partial cds blastn 10180 172 0.994186046511628 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium nigripes
18906573 18906573 PRJNA177642_P_NODE_16755_length_170_cov_1.035461_g15530_i0 PRJNA177642 16755 170 1.035461 1.7602837 Vannellidae 95227 Discosea other_Eukaryota 289 9.949999999999999e-74   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g15530 i0 97.633 93.7764705882353 169 3 99 1 1 169 1447 1614 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 15942 289 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
19491702 19491702 PRJNA177642_P_NODE_8496_length_411_cov_1.719895_g7284_i0 PRJNA177642 8496 411 1.719895 7.06876845 Ripella sp. GP2 1217115 Discosea other_Eukaryota 628 1.43e-175   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g7284 i0 94.417 99.1070559610706 412 17 100 5 1 411 569 975 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 40733 628 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;