RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA169559" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA169559 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2915725 2915725 PRJNA169559_P_NODE_37243_length_241_cov_140.844340_g35166_i0 PRJNA169559 37243 241 140.84434 339.4348594 Luteolibacter sp. AS25 3135776 Bacteria Bacteria 285 1.96e-72   NTclustered gi|2889346039|gb|CP151837.1| 3135776 g35166 i0 87.967 176.107883817427 241 29 100 0 1 241 454817 454577 Luteolibacter sp. AS25 chromosome, complete genome blastn 42442 285 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. AS25
9293053 9293053 PRJNA169559_P_NODE_23348_length_323_cov_2.942177_g21275_i0 PRJNA169559 23348 323 2.942177 9.50323171 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 71.3 8.37e-8   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g21275 i0 97.561 0.126934984520124 41 1 13 0 20 60 2899691 2899731 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 41 71.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
14393939 14393939 PRJNA169559_P_NODE_10532_length_521_cov_25.491870_g8755_i0 PRJNA169559 10532 521 25.49187 132.8126427 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 758 0   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g8755 i0 93.09 258.172744721689 521 31 100 5 1 521 2467 1952 Luteolibacter sp. SL250 chromosome blastn 134508 758 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;