RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA169559" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA169559 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6157596 6157596 PRJNA169559_P_NODE_6965_length_642_cov_20.097879_g5446_i0 PRJNA169559 6965 642 20.097879 129.02838318 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 824 0   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g5446 i0 90.156 49.892523364486 640 54 99 8 3 639 1272 1905 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 32031 824 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
23317319 23317319 PRJNA169559_P_NODE_7739_length_610_cov_346.624785_g6160_i0 PRJNA169559 7739 610 346.624785 2114.4111885 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 542 2.94e-149   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g6160 i0 88.172 40.8508196721311 465 41 82 11 3 456 14 475 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 24919 542 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
24591136 24591136 PRJNA169559_P_NODE_1380_length_1396_cov_52.643014_g781_i0 PRJNA169559 1380 1396 52.643014 734.89647544 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 549 4.159999999999998e-151   NTclustered gi|511487963|gb|JX898537.1| 1260765 g781 i0 84.779 39.067335243553 565 67 40 17 78 632 1 556 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 54538 549 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;