RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA169559" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA169559 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
364820 364820 PRJNA169559_P_NODE_13881_length_450_cov_7.273159_g11965_i0 PRJNA169559 13881 450 7.273159 32.7292155 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 230 1.8799999999999996e-55   NTclustered gi|813133999|ref|XM_012342618.1| 695850 g11965 i0 82.222 7.79777777777778 270 44 60 4 73 340 72 339 Saprolegnia parasitica CBS 223.65 ribonucleoprotein-associated protein mRNA blastn 3509 230 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
10569064 10569064 PRJNA169559_P_NODE_27709_length_278_cov_1.951807_g25633_i0 PRJNA169559 27709 278 1.951807 5.42602346 Phytophthora hydrogena 1286608 SAR_Eukaryotes SAR_Eukaryotes 169 2.44e-37   NTclustered gi|1233050041|gb|KX252277.1| 1286608 g25633 i0 84.524 60.2482014388489 168 26 60 0 1 168 181 14 Phytophthora hydrogena isolate 44G8(authentic) heat shock protein 90 gene, partial cds blastn 16749 169 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora hydrogena
11843697 11843697 PRJNA169559_P_NODE_45370_length_210_cov_5.149171_g43293_i0 PRJNA169559 45370 210 5.149171 10.8132591 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 102 1.8e-17   NTclustered gi|669149541|ref|XM_008612111.1| 1156394 g43293 i0 81.538 16.4761904761905 130 18 60 5 63 189 441 315 Saprolegnia diclina VS20 50S ribosomal protein L40e mRNA blastn 3460 102 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
18216910 18216910 PRJNA169559_P_NODE_9175_length_561_cov_2.494361_g7480_i0 PRJNA169559 9175 561 2.494361 13.99336521 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 76.8 3.28e-9   NTclustered gi|2794885173|ref|XM_067884476.1| 164328 g7480 i0 94 1.14081996434938 50 3 9 0 466 515 1970 2019 Phytophthora ramorum Senescence-specific cysteine protease SAG12 (KRP23_1382), partial mRNA blastn 640 76.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
18906306 18906306 PRJNA169559_P_NODE_5435_length_728_cov_2.690987_g4058_i0 PRJNA169559 5435 728 2.690987 19.59038536 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 411 1.04e-109   NTclustered gi|2795021761|ref|XM_067936233.1| 4785 g4058 i0 81.569 64.9478021978022 510 82 69 10 59 562 1143 640 Phytophthora cinnamomi proline-tRNA ligase (IUM83_11660), partial mRNA blastn 47282 411 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
23316959 23316959 PRJNA169559_P_NODE_13979_length_449_cov_2.757143_g12061_i0 PRJNA169559 13979 449 2.757143 12.37957207 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 172 3.2e-38   NTclustered gi|813117120|ref|XM_012340152.1| 695850 g12061 i0 80.603 26.9198218262806 232 38 51 6 59 288 1703 1477 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 12087 172 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;