RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA169559" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA169559 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2915532 2915532 PRJNA169559_P_NODE_15523_length_428_cov_5.591479_g13572_i0 PRJNA169559 15523 428 5.591479 23.93153012 Pristionchus hoplostomus 1355913 Nematoda Nematoda 161 6.569999999999998e-35   NTclustered gi|524845312|gb|KC819366.1| 1355913 g13572 i0 80.717 27.1892523364486 223 29 50 11 67 282 49 264 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 11637 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
5468246 5468246 PRJNA169559_P_NODE_21685_length_347_cov_13.185535_g19622_i0 PRJNA169559 21685 347 13.185535 45.75380645 Diplogastrellus sp. VS-2014 1538693 Nematoda Nematoda 163 1.4499999999999998e-35   NTclustered gi|675119125|gb|KJ877442.1| 1538693 g19622 i0 82.703 41.864553314121 185 30 53 2 98 281 64 247 Diplogastrellus sp. VS-2014 strain RS5608 small subunit ribosomal protein 27 (rps-27) mRNA, partial cds blastn 14527 163 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus sp. VS-2014
24591114 24591114 PRJNA169559_P_NODE_11760_length_491_cov_4.818182_g9919_i0 PRJNA169559 11760 491 4.818182 23.65727362 Levipalatum texanum 1486449 Nematoda Nematoda 200 1.6199999999999999e-46   NTclustered gi|610559467|gb|KJ395558.1| 1486449 g9919 i0 82.158 2.63543788187373 241 35 48 6 196 432 148 384 Levipalatum texanum ribosomal protein (rpl-23) gene, partial cds blastn 1294 200 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Levipalatum Levipalatum texanum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;